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[178366_at]

Description T02G6.5 /REP_DB=WormBase Gene ID /WP=CE18176 /TR=O62358 /GB=CAB04673.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 03      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 45.8
(-1.8)
M 		45.5
(-1.8)
P 		24.1
(-3)
A 		131.2
(3)
P 		107
B 60.5
(-1.3)
P 		44.1
(-3)
A 		69.4
(-0.4)
A 		103.5
(3)
P 		59
C 65.7
(-0.9)
P 		54.3
(-1.9)
A 		42.5
(-3)
A 		108.1
(3)
P 		66
avr 57.3
(-2) 		48
(-2.8) 		45.3
(-3) 		114.3
(3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 10.8
(-3)
A 		48
(-0.9)
P 		47.8
(-0.9)
A 		82.5
(1.1)
M 		72.5
(0.5)
P 		116.2
(3)
P 		105
B 40.7
(-2.3)
A 		29
(-3)
A 		36.1
(-2.6)
A 		34.6
(-2.7)
A 		72.3
(-0.3)
P 		125.5
(3)
P 		97
C 70.8
(0.8)
P 		46.3
(-0.9)
A 		15.4
(-3)
A 		36.9
(-1.5)
A 		49
(-0.7)
A 		103.1
(3)
P 		88
avr 40.8
(-2.4) 		41.1
(-2.4) 		33.1
(-3) 		51.3
(-1.7) 		64.6
(-0.7) 		114.9
(3) 		82
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 16.7
(1.8)
M 		9.9
(-1.3)
P 		6.3
(-3)
A 		19.2
(3)
P 		13
B 19.3
(1.5)
P 		10.9
(-3)
A 		16.1
(-0.2)
A 		22.1
(3)
P 		11
C 21.7
(3)
P 		15.6
(-2.3)
A 		14.8
(-3)
A 		18.2
(-0)
P 		7
avr 19.2
(2.5) 		12.1
(-3) 		12.4
(-2.8) 		19.8
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 2
(-3)
A 		17.1
(0.4)
P 		10.4
(-1.1)
A 		20.9
(1.3)
M 		21.9
(1.5)
P 		28.3
(3)
P 		26
B 14.1
(-2.2)
A 		9.7
(-2.9)
A 		8.8
(-3)
A 		9.2
(-2.9)
A 		29.4
(0.3)
P 		46.8
(3)
P 		38
C 26.3
(1.4)
P 		14.1
(-1)
A 		3.9
(-3)
A 		7.4
(-2.3)
A 		15.9
(-0.6)
A 		34.5
(3)
P 		31
avr 14.1
(-1.7) 		13.6
(-1.8) 		7.7
(-3) 		12.5
(-2) 		22.4
(0.1) 		36.5
(3) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178366_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2115
Sequence Type Exemplar sequence
Representative Public ID T02G6.5 NCBI
Target Description T02G6.5 /REP_DB=WormBase Gene ID /WP=CE18176 /TR=O62358 /GB=CAB04673.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060602(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060602 NCBI Caenorhabditis elegans T02G6.5 (T02G6.5) mRNA, complete cds. 11/11 None
GENEFINDER00000017974 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11824169:11827355:1 11/11 None
SNAP00000017968 ENSEMBL cdna:SNAP chromosome:CEL140:I:11826129:11827355:1 11/11 None
T02G6.5 ENSEMBL cdna:known chromosome:CEL140:I:11823953:11827355:1 gene:T02G6.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11823883-11827286(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T02G6.5
Entrez Gene 173060 Entrez gene
SwissProt O62358 EMBL-EBI
WormBase CE18176 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04673 Hypothetical protein T02G6.5 [Caenorhabditis elegans] ref|NP_493003.1| T02G6.5 [Caenorhabditis elegans] 0.0
blast CAB04673 Hypothetical protein T02G6.5 [Caenorhabditis elegans] ref|NP_493003.1| T02G6.5 [Caenorhabditis elegans] 1.0E-159
blast CAB60388 Hypothetical protein Y47H10A.2 [Caenorhabditis elegans] ref|NP_493053.2| Y47H10A.2 [Caenorhabditis elegans] 3.0E-56
blast CAA21028 Hypothetical protein Y39A1A.16 [Caenorhabditis elegans] ref|NP_499353.1| Y39A1A.16 [Caenorhabditis elegans] 3.0E-56
blast CAB60388 Hypothetical protein Y47H10A.2 [Caenorhabditis elegans] ref|NP_493053.2| Y47H10A.2 [Caenorhabditis elegans] 4.0E-56
blast CAA21028 Hypothetical protein Y39A1A.16 [Caenorhabditis elegans] ref|NP_499353.1| Y39A1A.16 [Caenorhabditis elegans] 4.0E-56
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.7E-5
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.7E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493003.1 1 141-160
T02G6.5 1 141-160
GENEFINDER00000017974 3 69-88,185-207,220-242
Sequence
Target Sequence 
>C. ELEGANS:178366_AT
gattcaccacaactctctatttggagattataagtcaattttgagtcatcaaatgttgga
taactgtcatgatgtggagattttcggacctgatttttccctccgtaatgatgaagtgaa
tatcttgttggatagaatcaatttaagcggaaaactatcgattgaatgcatgttcagttc
aagtttcaataaggaaatcctattcaacattccccaattagaaatctggaatgctttgag
cttcaccctccaagacgtgatgaacatgaactgtgaagtgataattctgcaacatcatat
cctcaagtcattggatatcaatcgtttgattcattattggttagccgggaagatgccgaa
tttgagaagaatccgagtcaacgccaatcctgatgcaaaaatgttaaggggaattgtgaa
ttatgcttggcacccaagaagacgtccacaagtttttagagacggactcgaacaactgga
ttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCACCACAACTCTCTATTTGGA 89 431 1152 Antisense
GATGTGGAGATTTTCGGACCTGATT 45 409 1222 Antisense
TGATTTTTCCCTCCGTAATGATGAA 399 561 1242 Antisense
ATGCATGTTCAGTTCAAGTTTCAAT 638 41 1317 Antisense
TCCTATTCAACATTCCCCAATTAGA 139 593 1349 Antisense
TCTGGAATGCTTTGAGCTTCACCCT 562 605 1376 Antisense
GCTTCACCCTCCAAGACGTGATGAA 642 305 1391 Antisense
CTGCAACATCATATCCTCAAGTCAT 41 239 1438 Antisense
AAGAATCCGAGTCAACGCCAATCCT 105 153 1518 Antisense
CTTGGCACCCAAGAAGACGTCCACA 233 213 1577 Antisense
GAGACGGACTCGAACAACTGGATTG 700 385 1610 Antisense
Sequence Source Affymetrix Proprietary Database