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[178365_s_at]

Description F59F4.3 /REP_DB=WormBase Gene ID /WP=CE20906 /TR=Q93840 /GB=CAB03159.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 07      4grp_highest_8_8 > 42      4grp_high_8_8 > 40      6grp_highest_nonorm > 80      6grp_total > 07      4grp_total > 55      6grp_highest_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 212
1 2 3 4 range
A 323.1
(3)
P 		212.1
(-2.4)
P 		199.3
(-3)
P 		236.8
(-1.2)
P 		124
B 349.4
(3)
P 		186
(-2.6)
P 		276.6
(0.5)
P 		174.7
(-3)
P 		175
C 314.8
(3)
P 		233.3
(0.2)
P 		208.7
(-0.6)
P 		137.2
(-3)
P 		178
avr 329.1
(3) 		210.5
(-1.9) 		228.2
(-1.1) 		182.9
(-3) 		146

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 210
1 2 3 4 5 6 range
A 369.5
(3)
P 		216.5
(-2)
P 		186.9
(-2.9)
P 		185.3
(-3)
P 		194.2
(-2.7)
P 		198.4
(-2.6)
P 		184
B 259.3
(3)
P 		238.8
(1.8)
P 		246
(2.2)
P 		235.5
(1.6)
P 		159.1
(-3)
P 		217.2
(0.5)
P 		100
C 340.6
(3)
P 		249.7
(-0.8)
P 		242.2
(-1.2)
P 		259.4
(-0.4)
P 		198.8
(-3)
P 		206
(-2.7)
P 		142
avr 323.1
(3) 		235
(-0.8) 		225
(-1.2) 		226.7
(-1.2) 		184
(-3) 		207.2
(-2) 		139
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 117.6
(3)
P 		46
(-2.2)
P 		52.1
(-1.7)
P 		34.7
(-3)
P 		83
B 111.4
(3)
P 		45.9
(-2.3)
P 		64.1
(-0.8)
P 		37.2
(-3)
P 		74
C 104.2
(3)
P 		67.1
(0.3)
P 		72.7
(0.7)
P 		23.1
(-3)
P 		81
avr 111.1
(3) 		53
(-1.4) 		63
(-0.6) 		31.7
(-3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 68.1
(1.5)
P 		77
(3)
P 		40.7
(-3)
P 		47
(-2)
P 		58.6
(-0)
P 		48.3
(-1.7)
P 		36
B 90.2
(3)
P 		79.5
(0.9)
P 		59.7
(-3)
P 		62.4
(-2.5)
P 		64.7
(-2)
P 		81
(1.2)
P 		31
C 126.3
(3)
P 		76.2
(-1.1)
P 		61.6
(-2.2)
P 		52.2
(-3)
P 		64.3
(-2)
P 		68.9
(-1.6)
P 		74
avr 94.9
(3) 		77.6
(0.5) 		54
(-3) 		53.9
(-3) 		62.5
(-1.7) 		66.1
(-1.2) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178365_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17544
Sequence Type Exemplar sequence
Representative Public ID F59F4.3 NCBI
Target Description F59F4.3 /REP_DB=WormBase Gene ID /WP=CE20906 /TR=Q93840 /GB=CAB03159.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078204(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078204 NCBI Caenorhabditis elegans F59F4.3 (F59F4.3) mRNA, complete cds. 11/11 None
SNAP00000031689 ENSEMBL cdna:SNAP chromosome:CEL140:X:15842544:15847659:-1 11/11 None
GENEFINDER00000031692 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15842544:15847496:-1 11/11 None
F59F4.3 ENSEMBL cdna:known chromosome:CEL140:X:15842343:15847506:-1 gene:F59F4.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15842543-15847496(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F59F4.3
Entrez Gene 181670 Entrez gene
SwissProt Q93840 EMBL-EBI
WormBase CE31551 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03159 Hypothetical protein F59F4.3 [Caenorhabditis elegans] ref|NP_510605.2| F59F4.3 [Caenorhabditis elegans] 0.0
blast CAE69735 Hypothetical protein CBG16006 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510605.2 3 21-40,418-435,448-470
F59F4.3 3 21-40,418-435,448-470
SNAP00000031689 5 24-46,66-88,388-410,430-452,464-486
GENEFINDER00000031692 3 21-40,425-442,455-477
Sequence
Target Sequence 
>C. ELEGANS:178365_S_AT
ggaagtactccgtccggattactcaaaccgctacgacatccatgacaaatcaaaacgaga
tgctcgtgaaaaacgtgatcgcaaggctctccgacacagagttcgccacgagctccgaat
ggcgatgaaggcagatgcagctaaagaacgagaccggaagaaagtgaccgatgcgattga
gctcttgctccagctgctccgaatgatgtcttcatttgcaatgctcattggaacaatcag
aaaaacttttattccagcatcgtttaaatatctcaaaccaggacaacatgcttatgacaa
ttatgagcttattttgcttttccgatgcaccgcttttctggatattgccatgttttggat
gaacgtcacctacgcgtactgcctgcaatggcaactgtgctgtcgactcggattcttccg
atttgtgttttgggcgatgcttcttggcgtggtgtcaacgacagtcatgttcatcccaat
gacgtatgtcatgaatgacttggatctaagctggtgccgattgatgcccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAGTACTCCGTCCGGATTACTCA 175 531 954 Antisense
ATTACTCAAACCGCTACGACATCCA 238 11 971 Antisense
AAAAACGTGATCGCAAGGCTCTCCG 34 131 1022 Antisense
GACCGATGCGATTGAGCTCTTGCTC 594 381 1119 Antisense
TTATTTTGCTTTTCCGATGCACCGC 62 679 1262 Antisense
GATGCACCGCTTTTCTGGATATTGC 368 413 1277 Antisense
TTGGATGAACGTCACCTACGCGTAC 67 709 1308 Antisense
GCAATGGCAACTGTGCTGTCGACTC 199 321 1338 Antisense
GCTTCTTGGCGTGGTGTCAACGACA 328 305 1392 Antisense
AACGACAGTCATGTTCATCCCAATG 38 145 1410 Antisense
TAAGCTGGTGCCGATTGATGCCCAA 526 637 1460 Antisense
Sequence Source Affymetrix Proprietary Database