[Home] | [Total List]

[178364_at]

Description ZK829.5 /REP_DB=WormBase Gene ID /WP=CE06653 /TR=Q23622 /GB=CAA98075.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 20      6grp_cgc > 69      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 34.8
(-0.1)
P 		41.2
(0.9)
A 		16.8
(-3)
A 		54.1
(3)
P 		37
B 44.9
(2.3)
A 		34.8
(1.1)
A 		1.7
(-3)
A 		50.3
(3)
A 		49
C 36.9
(-0.9)
A 		43.9
(-0.5)
A 		6.2
(-3)
A 		95.4
(3)
P 		89
avr 38.9
(0.2) 		40
(0.3) 		8.2
(-3) 		66.6
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 162
1 2 3 4 5 6 range
A 31.8
(-3)
A 		39.9
(-2.6)
P 		46.9
(-2.2)
P 		45.2
(-2.3)
A 		129.4
(2.4)
P 		141.1
(3)
P 		109
B 45.4
(-1.5)
A 		16.1
(-3)
A 		62.1
(-0.7)
P 		41.8
(-1.7)
P 		84.7
(0.4)
P 		137.3
(3)
P 		121
C 21.3
(-3)
A 		52.9
(-1.8)
A 		60.2
(-1.5)
A 		80.8
(-0.7)
P 		97.8
(-0.1)
P 		177.6
(3)
P 		156
avr 32.8
(-3) 		36.3
(-2.8) 		56.4
(-1.8) 		55.9
(-1.8) 		104
(0.6) 		152
(3) 		119
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 12.7
(3)
P 		8.9
(0.3)
A 		4.4
(-3)
A 		7.9
(-0.5)
P 		8
B 14.3
(3)
A 		8.6
(0.5)
A 		0.4
(-3)
A 		10.7
(1.4)
A 		14
C 12.2
(1.3)
A 		12.6
(1.5)
A 		2.1
(-3)
A 		16.1
(3)
P 		14
avr 13.1
(3) 		10
(1.3) 		2.3
(-3) 		11.6
(2.2) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 5.9
(-3)
A 		14.2
(-1.5)
P 		10.2
(-2.2)
P 		11.5
(-2)
A 		39
(3)
P 		34.4
(2.2)
P 		33
B 15.8
(-1.6)
A 		5.4
(-3)
A 		15.1
(-1.7)
P 		11.1
(-2.3)
P 		34.4
(0.8)
P 		51.2
(3)
P 		46
C 7.9
(-3)
A 		16.1
(-2)
A 		15.3
(-2.1)
A 		16.3
(-2)
P 		31.6
(-0.2)
P 		59.4
(3)
P 		52
avr 9.9
(-3) 		11.9
(-2.7) 		13.5
(-2.4) 		13
(-2.5) 		35
(0.9) 		48.3
(3) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178364_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9063
Sequence Type Exemplar sequence
Representative Public ID ZK829.5 NCBI
Target Description ZK829.5 /REP_DB=WormBase Gene ID /WP=CE06653 /TR=Q23622 /GB=CAA98075.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069865(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069865 NCBI Caenorhabditis elegans T BoX family member (tbx-36) (tbx-36) mRNA, complete cds. 11/11 None
SNAP00000012762 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11950574:11952046:1 11/11 None
GENEFINDER00000012776 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11950574:11952046:1 11/11 None
ZK829.5 ENSEMBL cdna:known chromosome:CEL140:IV:11950574:11952046:1 gene:ZK829.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11950579-11952052(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tbx-36
Ensembl ZK829.5
Entrez Gene 191435 Entrez gene
SwissProt Q23622 EMBL-EBI
WormBase CE06653 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98075 Hypothetical protein ZK829.5 [Caenorhabditis elegans] ref|NP_502266.1| T BoX family member (tbx-36) [Caenorhabditis elegans] sp|Q23622|TBX36_CAEEL Putative T-box protein 1.0E-178
Sequence
Target Sequence 
>C. ELEGANS:178364_AT
ctgtgtgtctctcctcgagaacaatgtatcaaatccgagttgtgttgtatgagatgcaaa
acgacgaactgatatacctgaaggaaacgaaattcgacgaaatgatattcatcacttgca
ctgaatatcgtggacaagtcaatcgtgaattgaagaagagtatgaatcgtttctcaagaa
aaagaaagtatgaaatcagtggaacaaagtgccagcgttcgaaacgtccagcaaaacttc
ctgtcgaatctctagatgagaaggaactaaaaaatgctgaaaagggaatcatgagtttgc
ttgaatcatcaccttcgtcaccatcgtacctttatcaatatcaatacaattctccacaat
caataccatcttctatttatgactctctctacccatcgtctccagaagaatatcagatgg
ttcatacttttccacaaacagaccaattatctcctagttttcaaacttcgcccacagtcc
attatgatttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGTGTGTCTCTCCTCGAGAACAAT 292 239 452 Antisense
AAGTGCCAGCGTTCGAAACGTCCAG 433 155 658 Antisense
AACGTCCAGCAAAACTTCCTGTCGA 160 141 674 Antisense
TTTGCTTGAATCATCACCTTCGTCA 229 669 747 Antisense
TCACCATCGTACCTTTATCAATATC 61 627 769 Antisense
TCTCCACAATCAATACCATCTTCTA 93 611 802 Antisense
TCTTCTATTTATGACTCTCTCTACC 351 617 820 Antisense
GATGGTTCATACTTTTCCACAAACA 390 407 867 Antisense
ACAGACCAATTATCTCCTAGTTTTC 375 67 889 Antisense
TCCTAGTTTTCAAACTTCGCCCACA 223 583 903 Antisense
TTCGCCCACAGTCCATTATGATTTT 255 697 918 Antisense
Sequence Source Affymetrix Proprietary Database