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[178362_at]

Description R04D3.6 /REP_DB=WormBase Gene ID /WP=CE06226 /TR=Q21714 /GB=CAA94164.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 52      4grp_total > 52      6grp_cgc > 91      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 11.8
(3)
A 		8.5
(-3)
A 		8.7
(-2.6)
A 		9.3
(-1.5)
A 		3
B 11.4
(2)
A 		8.4
(-0)
A 		12.9
(3)
A 		4
(-3)
A 		9
C 6.9
(-3)
A 		15.1
(3)
A 		7.3
(-2.7)
A 		12.3
(1)
A 		8
avr 10
(1.1) 		10.7
(3) 		9.6
(0) 		8.5
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 8.9
(1.2)
A 		5.4
(-1.6)
A 		11.1
(3)
A 		4.3
(-2.4)
A 		4.4
(-2.4)
A 		3.6
(-3)
A 		8
B 6.2
(-3)
A 		9.5
(-2.3)
A 		36.3
(3)
A 		11.3
(-2)
A 		10.1
(-2.2)
A 		7.5
(-2.7)
A 		30
C 15.2
(2.9)
A 		9.8
(0.2)
A 		10.6
(0.6)
A 		15.5
(3)
A 		3.3
(-3)
A 		6.3
(-1.5)
A 		12
avr 10.1
(-1.1) 		8.2
(-1.9) 		19.3
(3) 		10.4
(-1) 		5.9
(-3) 		5.8
(-3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 4.3
(3)
A 		1.8
(-2.2)
A 		2.3
(-1.1)
A 		1.4
(-3)
A 		3
B 3.6
(3)
A 		2.1
(-0.3)
A 		3
(1.7)
A 		0.9
(-3)
A 		3
C 2.3
(-2.5)
A 		4.3
(3)
A 		2.5
(-1.9)
A 		2.1
(-3)
A 		2
avr 3.4
(3) 		2.7
(0.8) 		2.6
(0.5) 		1.5
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 1.6
(-0.2)
A 		1.9
(1)
A 		2.4
(3)
A 		1.1
(-2.2)
A 		1.3
(-1.4)
A 		0.9
(-3)
A 		2
B 2.2
(-3)
A 		3.2
(-2.1)
A 		8.8
(3)
A 		3
(-2.3)
A 		4.1
(-1.3)
A 		2.8
(-2.5)
A 		7
C 5.6
(3)
A 		3
(-0.5)
A 		2.7
(-0.9)
A 		3.1
(-0.3)
A 		1.1
(-3)
A 		2.1
(-1.7)
A 		5
avr 3.1
(-0.3) 		2.7
(-1.2) 		4.6
(3) 		2.4
(-1.9) 		2.2
(-2.3) 		1.9
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178362_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17551
Sequence Type Exemplar sequence
Representative Public ID R04D3.6 NCBI
Target Description R04D3.6 /REP_DB=WormBase Gene ID /WP=CE06226 /TR=Q21714 /GB=CAA94164.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077811(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077811 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-36) (srd-36) mRNA, complete cds. 11/11 None
GENEFINDER00000014120 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13289057:13294689:-1 11/11 None
R04D3.6 ENSEMBL cdna:known chromosome:CEL140:X:13293335:13294689:-1 gene:R04D3.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13293334-13294689(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srd-36
Ensembl R04D3.6
Entrez Gene 187574 Entrez gene
SwissProt Q21714 EMBL-EBI
WormBase CE06226 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94163 Hypothetical protein R04D3.3 [Caenorhabditis elegans] ref|NP_510210.1| R04D3.3 [Caenorhabditis elegans] 0.0
blast CAA94164 Hypothetical protein R04D3.6 [Caenorhabditis elegans] ref|NP_510212.1| Serpentine Receptor, class D (delta) family member (srd-36) [Caenorhabditis elegans] 1.0E-177
blast CAA94164 Hypothetical protein R04D3.6 [Caenorhabditis elegans] ref|NP_510212.1| Serpentine Receptor, class D (delta) family member (srd-36) [Caenorhabditis elegans] 1.0E-155
blast CAE61417 Hypothetical protein CBG05282 [Caenorhabditis briggsae] 1.0E-136
blast CAE61417 Hypothetical protein CBG05282 [Caenorhabditis briggsae] 1.0E-118
blast CAB54284 Hypothetical protein R04D3.12 [Caenorhabditis elegans] ref|NP_510211.1| Serpentine Receptor, class D (delta) family member (srd-38) [Caenorhabditis elegans] 4.0E-91
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510212.1 7 10-32,45-67,95-117,130-152,189-211,238-260,275-297
R04D3.6 7 10-32,45-67,95-117,130-152,189-211,238-260,275-297
GENEFINDER00000014120 7 9-31,41-63,93-115,130-152,193-212,241-263,270-292
Sequence
Target Sequence 
>C. ELEGANS:178362_AT
cctatctttcatccttgttatcattatcgtcaaaacgcaaaccttttcgtgggaggctca
agagcaacttcgtcttgtgaacttatttttgaacaatgaagacgaatacctcgtttttgc
atttttgagtttttccaagtggccaaacactctcaatcttattattacaagtttttgtat
ttttgttgttcctgtgttgagttttcactggagaaaaagaaccctacgtcaaatctacca
tcaaatggaaaacatgtcggctcctcgacaacaactttacaaaagttttgttatgggtct
caccattcagtgcgtgcttccctatgtattctacattccaatttacaccctttactacta
ctgcttattaactggggaggaaatcttgttcttggagttttttctggttttgattccagc
gttgccaacattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTATCTTTCATCCTTGTTATCATT 476 269 438 Antisense
GCAAACCTTTTCGTGGGAGGCTCAA 137 319 474 Antisense
GAGCAACTTCGTCTTGTGAACTTAT 595 389 499 Antisense
TGGCCAAACACTCTCAATCTTATTA 633 543 577 Antisense
TGTATTTTTGTTGTTCCTGTGTTGA 196 561 613 Antisense
AGAACCCTACGTCAAATCTACCATC 170 69 655 Antisense
GTCGGCTCCTCGACAACAACTTTAC 485 471 693 Antisense
GTTATGGGTCTCACCATTCAGTGCG 470 447 727 Antisense
GTGCTTCCCTATGTATTCTACATTC 407 479 751 Antisense
TACATTCCAATTTACACCCTTTACT 42 635 769 Antisense
TTTGATTCCAGCGTTGCCAACATTG 19 667 846 Antisense
Sequence Source Affymetrix Proprietary Database