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[178361_at]

Description T27E7.4 /REP_DB=WormBase Gene ID /WP=CE20107 /TR=Q9XUC5 /GB=CAB05293.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 10      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 16
(3)
A 		2.7
(-3)
A 		2.9
(-2.9)
A 		13.1
(1.7)
A 		13
B 8.6
(-2)
A 		39.3
(2.4)
A 		1.8
(-3)
A 		43.4
(3)
A 		42
C 8.3
(-2.3)
A 		2.3
(-3)
A 		27
(-0)
A 		52
(3)
A 		50
avr 11
(-2.9) 		14.8
(-2) 		10.6
(-3) 		36.2
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 2.4
(-3)
A 		27
(2.1)
A 		15.5
(-0.3)
A 		3.2
(-2.8)
A 		31.6
(3)
A 		25.4
(1.7)
A 		29
B 5.9
(-2.6)
A 		27.4
(0.2)
A 		19.6
(-0.8)
A 		7
(-2.4)
A 		49
(3)
A 		2.6
(-3)
A 		46
C 9
(-1.8)
A 		30.9
(2.8)
A 		31.9
(3)
A 		31
(2.8)
A 		3.4
(-3)
A 		7.4
(-2.2)
A 		29
avr 5.8
(-3) 		28.4
(3) 		22.3
(1.4) 		13.7
(-0.9) 		28
(2.9) 		11.8
(-1.4) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 5.8
(3)
A 		0.6
(-3)
A 		0.7
(-2.9)
A 		1.9
(-1.5)
A 		5
B 2.8
(-1.5)
A 		9.7
(3)
A 		0.4
(-3)
A 		9.3
(2.7)
A 		9
C 2.7
(-1.6)
A 		0.6
(-3)
A 		9.4
(3)
A 		8.8
(2.6)
A 		9
avr 3.8
(-2.4) 		3.6
(-2.8) 		3.5
(-3) 		6.7
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 0.4
(-3)
A 		9.6
(3)
A 		3.4
(-1)
A 		0.8
(-2.7)
A 		9.5
(2.9)
A 		6.2
(0.8)
A 		9
B 2.1
(-2.7)
A 		9.1
(-0.4)
A 		4.8
(-1.8)
A 		1.9
(-2.7)
A 		19.9
(3)
A 		1
(-3)
A 		19
C 3.3
(-1.4)
A 		9.4
(3)
A 		8.1
(2.1)
A 		6.2
(0.7)
A 		1.1
(-3)
A 		2.5
(-2)
A 		8
avr 1.9
(-3) 		9.4
(2.4) 		5.4
(-0.5) 		3
(-2.2) 		10.2
(3) 		3.2
(-2.1) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178361_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8673
Sequence Type Exemplar sequence
Representative Public ID T27E7.4 NCBI
Target Description T27E7.4 /REP_DB=WormBase Gene ID /WP=CE20107 /TR=Q9XUC5 /GB=CAB05293.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070361(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070361 NCBI Caenorhabditis elegans T27E7.4 (T27E7.4) mRNA, complete cds. 11/11 None
GENEFINDER00000042437 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14533485:14535034:-1 11/11 None
T27E7.4 ENSEMBL cdna:known chromosome:CEL140:IV:14533485:14535034:-1 gene:T27E7.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000042429 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14533490-14535040(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T27E7.4
Entrez Gene 188998 Entrez gene
SwissProt Q9XUC5 EMBL-EBI
WormBase CE20107 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05293 Hypothetical protein T27E7.4 [Caenorhabditis elegans] ref|NP_502762.1| T27E7.4 [Caenorhabditis elegans] 0.0
blast CAE17979 Hypothetical protein T27E7.9 [Caenorhabditis elegans] ref|NP_001023405.1| T27E7.9 [Caenorhabditis elegans] 1.0E-80
blast CAB05290 Hypothetical protein T27E7.3 [Caenorhabditis elegans] ref|NP_502761.1| T27E7.3 [Caenorhabditis elegans] 5.0E-55
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502762.1 7 35-57,86-103,118-149,184-205,225-247,268-290,305-327
T27E7.4 7 35-57,86-103,118-149,184-205,225-247,268-290,305-327
GENEFINDER00000042437 7 35-57,86-103,118-149,184-205,225-247,268-290,305-327
Sequence
Target Sequence 
>C. ELEGANS:178361_AT
ttgtgataatccccgtaatcgccatattttcaataggctggctttctgaactgttgccgg
ttggagctaatgctacactgaaaactcagctgacatattccagagtttttgaattagttt
caaacgactcaatcttctttttggtgcctgtcactgtattgtattatttctacagaacac
gcaacctaaataacaaaaaaaatctcagaaaccctttgcaagattatattttcaaacagg
caatgattatggtagtcattaaagctatattaattactgttttcctaatcatggttctac
ttgacaatagaatttcgtggttaatgatagcttcacgaatggatcaaatggtagtagttg
tggcagttcaaatttctgcaattatctgtttccaaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGTGATAATCCCCGTAATCGCCAT 543 707 581 Antisense
TCCCCGTAATCGCCATATTTTCAAT 240 597 590 Antisense
GCTGGCTTTCTGAACTGTTGCCGGT 419 293 617 Antisense
TGTTGCCGGTTGGAGCTAATGCTAC 475 563 632 Antisense
GAAAACTCAGCTGACATATTCCAGA 303 355 660 Antisense
ACGACTCAATCTTCTTTTTGGTGCC 56 93 704 Antisense
GGTGCCTGTCACTGTATTGTATTAT 85 503 723 Antisense
ATTTCTACAGAACACGCAACCTAAA 190 17 746 Antisense
AAAAATCTCAGAAACCCTTTGCAAG 700 127 778 Antisense
GTTTTCCTAATCATGGTTCTACTTG 520 447 859 Antisense
TTCTGCAATTATCTGTTTCCAAAAG 693 667 954 Antisense
Sequence Source Affymetrix Proprietary Database