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[178360_at]

Description T20D3.1 /REP_DB=WormBase Gene ID /WP=CE03670 /TR=O01253 /GB=CAA92484.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 32      4grp_total > 10      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 16.2
(-3)
A 		34.2
(-1.9)
A 		19.2
(-2.8)
A 		112.4
(3)
A 		96
B 6.2
(-3)
A 		19.8
(-0.2)
A 		8.3
(-2.6)
A 		35.6
(3)
A 		29
C 25.1
(-1.8)
A 		28.9
(-1.4)
A 		12.6
(-3)
A 		74
(3)
A 		61
avr 15.8
(-2.8) 		27.6
(-1.6) 		13.4
(-3) 		74
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 30.5
(-1)
A 		44.1
(-0)
A 		83.6
(3)
A 		29
(-1.2)
A 		60.4
(1.2)
A 		4.8
(-3)
A 		79
B 68.9
(3)
A 		38.9
(0)
A 		31
(-0.8)
A 		35.5
(-0.3)
A 		41.1
(0.2)
A 		8.4
(-3)
A 		61
C 48.6
(0.7)
A 		41.2
(0.1)
A 		75.8
(3)
A 		21.2
(-1.5)
A 		20.5
(-1.6)
A 		3.6
(-3)
A 		72
avr 49.3
(1.5) 		41.4
(0.7) 		63.5
(3) 		28.6
(-0.6) 		40.7
(0.6) 		5.6
(-3) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 5.9
(-2.5)
A 		7.4
(-1.7)
A 		5
(-3)
A 		16.5
(3)
A 		12
B 2
(-2.9)
A 		4.9
(0.2)
A 		1.9
(-3)
A 		7.6
(3)
A 		6
C 8.3
(-0.1)
A 		8.3
(-0.1)
A 		4.4
(-3)
A 		12.5
(3)
A 		8
avr 5.4
(-1.9) 		6.9
(-0.8) 		3.8
(-3) 		12.2
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 5.6
(-1.4)
A 		15.7
(2.1)
A 		18.2
(3)
A 		7.4
(-0.8)
A 		18.2
(3)
A 		1.2
(-3)
A 		17
B 24
(3)
A 		13
(-0.2)
A 		7.5
(-1.7)
A 		9.4
(-1.2)
A 		16.7
(0.9)
A 		3.1
(-3)
A 		21
C 18
(2.6)
A 		12.6
(0.8)
A 		19.3
(3)
A 		4.3
(-2)
A 		6.6
(-1.2)
A 		1.2
(-3)
A 		18
avr 15.9
(3) 		13.8
(2.1) 		15
(2.6) 		7
(-0.8) 		13.8
(2.1) 		1.8
(-3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178360_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9998
Sequence Type Exemplar sequence
Representative Public ID T20D3.1 NCBI
Target Description T20D3.1 /REP_DB=WormBase Gene ID /WP=CE03670 /TR=O01253 /GB=CAA92484.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069238(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069238 NCBI Caenorhabditis elegans T20D3.1 (T20D3.1) mRNA, complete cds. 11/11 None
SNAP00000040155 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9327987:9328722:1 11/11 None
GENEFINDER00000040171 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9327987:9328722:1 11/11 None
T20D3.1 ENSEMBL cdna:known chromosome:CEL140:IV:9327987:9328722:1 gene:T20D3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9327992-9328728(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T20D3.1
Entrez Gene 188635 Entrez gene
SwissProt O01253 EMBL-EBI
WormBase CE03670 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92484 Hypothetical protein T20D3.1 [Caenorhabditis elegans] ref|NP_501639.1| T20D3.1 [Caenorhabditis elegans] 1.0E-109
blast CAE71115 Hypothetical protein CBG17968 [Caenorhabditis briggsae] 2.0E-22
blast CAE71114 Hypothetical protein CBG17967 [Caenorhabditis briggsae] 2.0E-21
Sequence
Target Sequence 
>C. ELEGANS:178360_AT
taggagctgtcatctttgtttccaccaaaagtacctgccggacaagaactaaacctccaa
gtactgtacctatgaatgaagtaactgaagctgtaacaaccaagaaagcaagcaatgtta
ccgttaaacctacaacatgtgaggcaagttggactcgagtggaaagatcaattggtggat
ggtgtctgaaggtttacaatggatttgttcatcaagatcaggcttctcaggcttgtatta
gaatcggagctgaactatctggaagtgaaagttctgctgaaagagctgttattgcaagac
ttggaaaagaaagaatgctcgctgcttctgactataaatttggaactattcgagttggaa
ttgcaagacctactacaactagagcttgggcactcaccgatggaaataatgatggaggtc
agcaaggtattcaatggagtaagggagaaccacaactgggtccaaccagcggatattccc
ataattgtgctcttatgtggatttgggcttcaactggaaccagcccttatgaacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGGAGCTGTCATCTTTGTTTCCAC 249 655 41 Antisense
TTCCACCAAAAGTACCTGCCGGACA 643 695 60 Antisense
CTAAACCTCCAAGTACTGTACCTAT 598 209 89 Antisense
AGATCAGGCTTCTCAGGCTTGTATT 98 67 255 Antisense
AATGCTCGCTGCTTCTGACTATAAA 608 165 354 Antisense
GACCTACTACAACTAGAGCTTGGGC 542 381 407 Antisense
GCTTGGGCACTCACCGATGGAAATA 164 307 424 Antisense
GGAGAACCACAACTGGGTCCAACCA 225 505 484 Antisense
GTCCAACCAGCGGATATTCCCATAA 649 475 500 Antisense
GTGGATTTGGGCTTCAACTGGAACC 707 489 537 Antisense
AACTGGAACCAGCCCTTATGAACAT 75 135 552 Antisense
Sequence Source Affymetrix Proprietary Database