[Home] | [Total List]

[178359_s_at]

Description T28B8.1 /REP_DB=WormBase Gene ID /WP=CE14329 /TR=P91833 /GB=CAB03441.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 58      4grp_highest_8_8 > 07      4grp_high_8_8 > 20      6grp_highest_nonorm > 78      6grp_total > 49      4grp_total > 19      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2291
1 2 3 4 range
A 1167.6
(-1.8)
P 		1745.4
(-0.1)
P 		766.1
(-3)
P 		2768.6
(3)
P 		2003
B 1279.6
(-1.7)
P 		1601.9
(-0.8)
P 		790.5
(-3)
P 		3015.4
(3)
P 		2225
C 1205.5
(-1.4)
P 		1791.1
(0.6)
P 		724.6
(-3)
P 		2522.4
(3)
P 		1798
avr 1217.6
(-1.6) 		1712.8
(-0.2) 		760.4
(-3) 		2768.8
(3) 		2008

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1488
1 2 3 4 5 6 range
A 1924.6
(3)
P 		1193.7
(-1.4)
P 		924.8
(-3)
P 		1067.6
(-2.1)
P 		1645.1
(1.3)
P 		1796.9
(2.2)
P 		1000
B 1745.7
(0.7)
P 		1369.7
(-1.1)
P 		1333.3
(-1.3)
P 		979.6
(-3)
P 		1627.3
(0.2)
P 		2210.3
(3)
P 		1231
C 1897.5
(1.8)
P 		1365.3
(-0.4)
P 		722.4
(-3)
P 		914.4
(-2.2)
P 		1345.3
(-0.5)
P 		2206.3
(3)
P 		1484
avr 1855.9
(1.8) 		1309.6
(-1.2) 		993.5
(-3) 		987.2
(-3) 		1539.2
(0.1) 		2071.2
(3) 		1084
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 459
1 2 3 4 range
A 425.1
(3)
P 		378.9
(1.8)
P 		200.3
(-3)
P 		405.3
(2.5)
P 		225
B 408.1
(-0.1)
P 		395.6
(-0.2)
P 		183.2
(-3)
P 		642.6
(3)
P 		459
C 399
(0.3)
P 		514.9
(3)
P 		252.5
(-3)
P 		425.3
(1)
P 		262
avr 410.7
(1.3) 		429.8
(1.7) 		212
(-3) 		491.1
(3) 		279

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 640
1 2 3 4 5 6 range
A 354.8
(0.1)
P 		424.5
(1.5)
P 		201.4
(-3)
P 		270.8
(-1.6)
P 		496.4
(3)
P 		437.5
(1.8)
P 		295
B 607.4
(0.7)
P 		455.9
(-0.9)
P 		323.8
(-2.3)
P 		259.5
(-3)
P 		661.1
(1.3)
P 		824.2
(3)
P 		565
C 703.3
(2.6)
P 		416.6
(-0.5)
P 		183.9
(-3)
P 		183.9
(-3)
P 		435.3
(-0.3)
P 		738.6
(3)
P 		555
avr 555.2
(1.4) 		432.3
(-0.3) 		236.4
(-3) 		238.1
(-3) 		530.9
(1.1) 		666.8
(3) 		430
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178359_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.686
Sequence Type Exemplar sequence
Representative Public ID T28B8.1 NCBI
Target Description T28B8.1 /REP_DB=WormBase Gene ID /WP=CE14329 /TR=P91833 /GB=CAB03441.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059828(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059828 NCBI Caenorhabditis elegans T28B8.1 (T28B8.1) mRNA, complete cds. 11/11 None
GENEFINDER00000004705 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8140715:8142861:1 11/11 None
SNAP00000004692 ENSEMBL cdna:SNAP chromosome:CEL140:I:8142270:8142861:1 11/11 None
T28B8.1.2 ENSEMBL cdna:known chromosome:CEL140:I:8142239:8143165:1 gene:T28B8.1 11/11 None
T28B8.1.3 ENSEMBL cdna:known chromosome:CEL140:I:8142239:8143165:1 gene:T28B8.1 11/11 None
T28B8.1.1 ENSEMBL cdna:known chromosome:CEL140:I:8142241:8143165:1 gene:T28B8.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8142200-8142792(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T28B8.1
Entrez Gene 172599 Entrez gene
SwissProt P91833 EMBL-EBI
WormBase CE14329 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03441 Hypothetical protein T28B8.1 [Caenorhabditis elegans] ref|NP_492229.1| T28B8.1 [Caenorhabditis elegans] 9.0E-89
blast CAB03441 Hypothetical protein T28B8.1 [Caenorhabditis elegans] ref|NP_492229.1| T28B8.1 [Caenorhabditis elegans] 2.0E-88
blast CAE72306 Hypothetical protein CBG19438 [Caenorhabditis briggsae] 7.0E-22
Sequence
Target Sequence 
>C. ELEGANS:178359_S_AT
gtatcttcgacgctttcaactttatgggatccgatgaagaatctactgccgccccagtcg
atcaagaagggcaagagcaactgattgatgaggacggatgggtcaacttcaaccatccta
cagaatccggggacagcgacgaattcgcattcatcgaaaatccggagatcctcgaaatgg
gagacgagacgacaattgaggtggagatgaggacgacgccttgtccagaagttgaagcga
tcaagagacgggaagaatacaatcttgcgaaggctaagaccgcattcaggaatcatttgg
agtcggtgatgttcgccgacccggattccggaaaggatgttcgaaccttcaagtcaactc
atggttccggacgttctgtgccaaccgcctccggctcaattcgtcgccttaatactcaat
cccaaagatctaagaagtcctccggaaagagcaatgatcgcaagacgcatcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATCTTCGACGCTTTCAACTTTAT 337 453 23 Antisense
GCCGCCCCAGTCGATCAAGAAGGGC 539 285 70 Antisense
ATGGGTCAACTTCAACCATCCTACA 605 47 120 Antisense
CCATCCTACAGAATCCGGGGACAGC 379 271 135 Antisense
GGACAGCGACGAATTCGCATTCATC 237 525 153 Antisense
GAGATGAGGACGACGCCTTGTCCAG 28 395 226 Antisense
GCGAAGGCTAAGACCGCATTCAGGA 438 287 289 Antisense
GATGTTCGAACCTTCAAGTCAACTC 254 403 358 Antisense
AAGTCAACTCATGGTTCCGGACGTT 577 151 373 Antisense
AATTCGTCGCCTTAATACTCAATCC 317 177 420 Antisense
GAGCAATGATCGCAAGACGCATCGT 309 391 471 Antisense
Sequence Source Affymetrix Proprietary Database