[Home] | [Total List]

[178358_at]

Description F35G2.3 /REP_DB=WormBase Gene ID /WP=CE05810 /TR=Q20064 /GB=CAA93468.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 14      6grp_total > 45      4grp_total > 11      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 28.6
(-1)
P 		34.7
(-0.5)
A 		1.8
(-3)
A 		81.4
(3)
P 		80
B 38.4
(3)
A 		31.3
(-3)
P 		32.5
(-2)
P 		38.2
(2.8)
P 		7
C 16.7
(-2.8)
A 		23.3
(-2.3)
A 		13.5
(-3)
A 		94.9
(3)
P 		81
avr 27.9
(-1.7) 		29.8
(-1.5) 		15.9
(-3) 		71.5
(3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 25.5
(-1.4)
A 		21.8
(-3)
A 		35.5
(3)
P 		24.1
(-2)
A 		22
(-2.9)
A 		28.2
(-0.2)
A 		14
B 20
(-1.1)
P 		30.6
(0.9)
P 		30.8
(0.9)
P 		10.3
(-3)
A 		41.6
(3)
P 		17.4
(-1.6)
P 		31
C 28.1
(2)
P 		33.4
(3)
P 		9.7
(-1.7)
A 		3
(-3)
A 		7.9
(-2)
A 		25.5
(1.4)
A 		30
avr 24.5
(1.5) 		28.6
(3) 		25.3
(1.8) 		12.5
(-3) 		23.8
(1.2) 		23.7
(1.2) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 10.4
(2.2)
P 		7.5
(0.7)
A 		0.5
(-3)
A 		11.9
(3)
P 		11
B 12.2
(3)
A 		7.7
(-2.7)
P 		7.5
(-3)
P 		8.1
(-2.2)
P 		5
C 5.5
(-2.6)
A 		6.7
(-1.9)
A 		4.7
(-3)
A 		16
(3)
P 		11
avr 9.4
(1) 		7.3
(-0.6) 		4.2
(-3) 		12
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 4.7
(-3)
A 		7.8
(3)
A 		7.7
(2.8)
P 		6.1
(-0.3)
A 		6.6
(0.7)
A 		6.9
(1.3)
A 		3
B 6.9
(-1.2)
P 		10.2
(0.2)
P 		7.5
(-1)
P 		2.7
(-3)
A 		16.9
(3)
P 		6.5
(-1.4)
P 		14
C 10.4
(3)
P 		10.2
(2.9)
P 		2.5
(-1.8)
A 		0.6
(-3)
A 		2.6
(-1.8)
A 		8.5
(1.8)
A 		10
avr 7.3
(1) 		9.4
(3) 		5.9
(-0.3) 		3.1
(-3) 		8.7
(2.3) 		7.3
(1) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178358_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10084
Sequence Type Exemplar sequence
Representative Public ID F35G2.3 NCBI
Target Description F35G2.3 /REP_DB=WormBase Gene ID /WP=CE05810 /TR=Q20064 /GB=CAA93468.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069915(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069915 NCBI Caenorhabditis elegans F35G2.3 (F35G2.3) mRNA, complete cds. 11/11 None
SNAP00000015554 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12209631:12210708:1 11/11 None
F35G2.3 ENSEMBL cdna:known chromosome:CEL140:IV:12209679:12210708:1 gene:F35G2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12209684-12210714(+) 91.57 100.0
Public Domain and Genome References
Gene Title
Ensembl F35G2.3
Entrez Gene 185319 Entrez gene
SwissProt Q20064 EMBL-EBI
WormBase CE05810 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93468 Hypothetical protein F35G2.3 [Caenorhabditis elegans] ref|NP_502316.1| F35G2.3 [Caenorhabditis elegans] 6.0E-83
blast CAA93468 Hypothetical protein F35G2.3 [Caenorhabditis elegans] ref|NP_502316.1| F35G2.3 [Caenorhabditis elegans] 7.0E-83
blast CAE62201 Hypothetical protein CBG06251 [Caenorhabditis briggsae] 3.0E-27
blast CAE62201 Hypothetical protein CBG06251 [Caenorhabditis briggsae] 4.0E-27
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502316.1 1 7-24
F35G2.3 1 7-24
SNAP00000015554 1 20-39
Sequence
Target Sequence 
>C. ELEGANS:178358_AT
atggataatttcccgattctattcgggttactgtacgcggttactgtagctctgttaatg
ttgcaaatagttgaggaaaaggcaaaggctcattaccaactaaaattaatgtgcgagtct
agtgaggaaatgattaaagagcaccagaaggagatgaaaatagagagaagtaaaatcagc
aatcatttaatcaaaattcgaatgcatcaaagagattttgtggcaaaaattggtggactt
cagagaaaactgaaagagcgaaacgaggtgataaaggaattgagccaaaaactggaatca
ttggaatttgcggaggaagatgcaaatgagttggttgatgatttggtacaagccagaaag
attattaaagagaaaaacgaaatgattgaactgcttaaattcgagatcgagttcaacaaa
acaaatttccagaatgacttaaagagtgcgttgcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGATAATTTCCCGATTCTATTCG 693 51 13 Antisense
GATTCTATTCGGGTTACTGTACGCG 340 429 27 Antisense
TTCGGGTTACTGTACGCGGTTACTG 176 609 34 Antisense
GTACGCGGTTACTGTAGCTCTGTTA 525 449 45 Antisense
GTAGCTCTGTTAATGTTGCAAATAG 336 457 58 Antisense
AAGGCAAAGGCTCATTACCAACTAA 415 159 91 Antisense
ATTAATGTGCGAGTCTAGTGAGGAA 430 11 117 Antisense
ACTGGAATCATTGGAATTTGCGGAG 11 97 303 Antisense
GTTGGTTGATGATTTGGTACAAGCC 308 437 342 Antisense
GAACTGCTTAAATTCGAGATCGAGT 679 347 400 Antisense
GAATGACTTAAAGAGTGCGTTGCAA 267 329 444 Antisense
Sequence Source Affymetrix Proprietary Database