[Home] | [Total List]

[178357_at]

Description ZK520.2 /REP_DB=WormBase Gene ID /WP=CE24729 /TR=O46019 /GB=CAB07300.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 18      6grp_high1_10_10 > 62      4grp_highest_8_8 > 11      4grp_high_8_8 > 47      6grp_highest_nonorm > 71      6grp_total > 72      4grp_total > 40      6grp_highest_sub > 04_05      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 370
1 2 3 4 range
A 339
(-3)
P 		498.5
(3)
P 		496.6
(2.9)
P 		421.3
(0.1)
P 		160
B 307.3
(-3)
P 		562.8
(1.1)
P 		677
(3)
P 		471.2
(-0.3)
P 		370
C 357.6
(-3)
P 		464.5
(-0.5)
P 		610.6
(3)
P 		445.5
(-0.9)
P 		253
avr 334.6
(-3) 		508.6
(1) 		594.7
(3) 		446
(-0.4) 		260

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 214
1 2 3 4 5 6 range
A 331.4
(-0.7)
P 		360.4
(0.4)
P 		358.7
(0.3)
P 		432.2
(3)
P 		327.6
(-0.8)
P 		267.1
(-3)
P 		165
B 349
(0.8)
P 		307.5
(-1.5)
P 		363.3
(1.5)
P 		360.8
(1.4)
P 		389.7
(3)
P 		280.5
(-3)
P 		109
C 271.5
(-3)
P 		308.7
(-1.9)
P 		480.9
(3)
P 		308.9
(-1.9)
P 		456.5
(2.3)
P 		343.2
(-0.9)
P 		209
avr 317.3
(-1.8) 		325.5
(-1.4) 		401
(3) 		367.3
(1.1) 		391.3
(2.4) 		296.9
(-3) 		104
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 151
1 2 3 4 range
A 123.4
(2.4)
P 		108.2
(1.1)
P 		129.8
(3)
P 		61.7
(-3)
P 		68
B 98
(-3)
P 		139
(1.2)
P 		156.9
(3)
P 		100.4
(-2.8)
P 		59
C 118.4
(-1.1)
P 		133.6
(-0.5)
P 		212.8
(3)
P 		75.1
(-3)
P 		138
avr 113.3
(-0.7) 		126.9
(0.3) 		166.5
(3) 		79.1
(-3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 61.1
(-3)
P 		128.2
(3)
P 		78.1
(-1.5)
P 		109.6
(1.3)
P 		98.8
(0.4)
P 		65
(-2.7)
P 		67
B 121.4
(-0.2)
P 		102.4
(-1.8)
P 		88.2
(-3)
P 		95.6
(-2.4)
P 		158.3
(3)
P 		104.6
(-1.6)
P 		70
C 100.6
(-0.3)
P 		94.2
(-0.8)
P 		122.4
(1.2)
P 		62.1
(-3)
P 		147.7
(3)
P 		114.9
(0.7)
P 		86
avr 94.4
(-2.3) 		108.3
(-0.5) 		96.2
(-2.1) 		89.1
(-3) 		134.9
(3) 		94.8
(-2.3) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178357_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7220
Sequence Type Exemplar sequence
Representative Public ID ZK520.2 NCBI
Target Description ZK520.2 /REP_DB=WormBase Gene ID /WP=CE24729 /TR=O46019 /GB=CAB07300.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067422(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067422 NCBI Caenorhabditis elegans ZK520.2 (ZK520.2) mRNA, complete cds. 10/11 None
SNAP00000038072 ENSEMBL cdna:SNAP chromosome:CEL140:III:13678961:13681877:1 10/11 None
GENEFINDER00000038078 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13678964:13681877:1 11/11 None
ZK520.2.1 ENSEMBL cdna:known chromosome:CEL140:III:13678955:13681965:1 gene:ZK520.2 10/11 None
ZK520.2.2 ENSEMBL cdna:known chromosome:CEL140:III:13678961:13681898:1 gene:ZK520.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13678959-13681873(+) 98.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK520.2
Entrez Gene 176805 Entrez gene
SwissProt O46019 EMBL-EBI
WormBase CE33908 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07300 Hypothetical protein ZK520.2 [Caenorhabditis elegans] gb|AAS45709.1| SID-2 [Caenorhabditis elegans] ref|NP_499823.2| ZK520.2 [Caenorhabditis elegans] 1.0E-162
blast CAB07300 Hypothetical protein ZK520.2 [Caenorhabditis elegans] gb|AAS45709.1| SID-2 [Caenorhabditis elegans] ref|NP_499823.2| ZK520.2 [Caenorhabditis elegans] 1.0E-158
blast CAE71376 Hypothetical protein CBG18280 [Caenorhabditis briggsae] 7.0E-43
blast CAE71376 Hypothetical protein CBG18280 [Caenorhabditis briggsae] 3.0E-39
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499823.2 2 5-27,189-211
ZK520.2.1 2 5-27,189-211
ZK520.2.2 2 5-27,189-211
SNAP00000038072 2 5-27,190-212
GENEFINDER00000038078 1 211-233
Sequence
Target Sequence 
>C. ELEGANS:178357_AT
taattcaagcgcagtgccaacgccggcatcaaccacgccgttacctcaatcaacagttgc
acatttgacgacgcattttgtactacaaaaagttattaaaggtggagtagcaccaccaac
tttccctaaaattcagattgcttacgtccacttacaatacgaagaaacaaagacggttgt
gaataaaaatggcggagcggttgccgttgcagtcatcgaaggcatcgccttgattgctat
acttgcatttttggggtatcgaactatggtgaaccataaattgcaaaattcaacaaggac
taatggattgtatggatatgataataataatagctcgcgaattacagtaccagatgctat
gcgaatgagtgatattccaccaccacgggacccgatgtatgcctcacctccaacgccact
gtcgcagccgacgccggcaaggaatacggtaatgacaactcaagaactcgtggtcccgac
ggcgaattcatcggccgcacaaccttcaacaacctcaaatggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATTCAAGCGCAGTGCCAACGCCG 360 635 453 Antisense
CGCCGTTACCTCAATCAACAGTTGC 256 257 488 Antisense
TTCAGATTGCTTACGTCCACTTACA 631 687 584 Antisense
AAAATGGCGGAGCGGTTGCCGTTGC 460 127 638 Antisense
GTTGCAGTCATCGAAGGCATCGCCT 200 439 658 Antisense
GCATCGCCTTGATTGCTATACTTGC 514 309 674 Antisense
ATAGCTCGCGAATTACAGTACCAGA 549 21 782 Antisense
CCACCACCACGGGACCCGATGTATG 654 273 829 Antisense
CAACTCAAGAACTCGTGGTCCCGAC 274 183 908 Antisense
TCCCGACGGCGAATTCATCGGCCGC 530 595 926 Antisense
ACAACCTTCAACAACCTCAAATGGG 480 113 951 Antisense
Sequence Source Affymetrix Proprietary Database