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[178356_at]

Description F59A1.8 /REP_DB=WormBase Gene ID /WP=CE18792 /TR=Q9XUW1 /GB=CAB04532.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 08      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 16.3
(-3)
A 		27.1
(1.6)
A 		21
(-1)
A 		30.5
(3)
A 		14
B 10.4
(-2.9)
A 		9.5
(-3)
A 		15.7
(-2)
A 		46.1
(3)
A 		37
C 30.4
(3)
A 		13.9
(-2.8)
A 		29
(2.5)
A 		13.2
(-3)
A 		17
avr 19
(-2) 		16.8
(-3) 		21.9
(-0.7) 		29.9
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 65.3
(3)
A 		26.8
(-1)
A 		7.1
(-3)
A 		14.3
(-2.3)
A 		43.3
(0.7)
A 		12.4
(-2.5)
A 		58
B 14.8
(-1.9)
A 		6.6
(-3)
A 		30
(0)
A 		29
(-0.1)
A 		53
(3)
A 		21.4
(-1.1)
A 		46
C 14.9
(-3)
A 		43.2
(3)
A 		26.9
(-0.5)
A 		16.8
(-2.6)
A 		23.7
(-1.1)
A 		38.7
(2)
A 		28
avr 31.7
(0.5) 		25.5
(-1.4) 		21.3
(-2.6) 		20
(-3) 		40
(3) 		24.2
(-1.7) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 5.9
(3)
A 		5.9
(3)
A 		5.5
(1.3)
A 		4.5
(-3)
A 		1
B 3.3
(-2.2)
A 		2.3
(-3)
A 		3.6
(-2)
A 		9.8
(3)
A 		8
C 10.1
(3)
A 		4
(-1.6)
A 		10.1
(3)
A 		2.2
(-3)
A 		8
avr 6.4
(3) 		4.1
(-3) 		6.4
(3) 		5.5
(0.7) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 12
(2.4)
A 		9.5
(1.1)
A 		1.5
(-3)
A 		3.6
(-1.9)
A 		13.1
(3)
A 		3
(-2.2)
A 		12
B 5.2
(-2.1)
A 		2.2
(-3)
A 		7.3
(-1.4)
A 		7.7
(-1.3)
A 		21.5
(3)
A 		8
(-1.2)
A 		19
C 5.5
(-1.7)
A 		13.2
(3)
A 		6.9
(-0.9)
A 		3.4
(-3)
A 		7.7
(-0.4)
A 		12.9
(2.8)
A 		10
avr 7.6
(-1.2) 		8.3
(-0.8) 		5.2
(-2.8) 		4.9
(-3) 		14.1
(3) 		8
(-1) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178356_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14136
Sequence Type Exemplar sequence
Representative Public ID F59A1.8 NCBI
Target Description F59A1.8 /REP_DB=WormBase Gene ID /WP=CE18792 /TR=Q9XUW1 /GB=CAB04532.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075066(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075066 NCBI Caenorhabditis elegans F59A1.8 (F59A1.8) mRNA, complete cds. 11/11 None
SNAP00000002315 ENSEMBL cdna:SNAP chromosome:CEL140:V:17658157:17658855:-1 11/11 None
GENEFINDER00000002332 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17658157:17659385:-1 10/11 None
F59A1.8 ENSEMBL cdna:known chromosome:CEL140:V:17658157:17658855:-1 gene:F59A1.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17658156-17658855(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F59A1.8
Entrez Gene 186561 Entrez gene
SwissProt Q9XUW1 EMBL-EBI
WormBase CE18792 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04532 Hypothetical protein F59A1.8 [Caenorhabditis elegans] ref|NP_507467.1| F59A1.8 [Caenorhabditis elegans] 1.0E-119
blast CAB04532 Hypothetical protein F59A1.8 [Caenorhabditis elegans] ref|NP_507467.1| F59A1.8 [Caenorhabditis elegans] 1.0E-112
blast CAD89750 Hypothetical protein T25E12.12 [Caenorhabditis elegans] ref|NP_001024155.1| T25E12.12 [Caenorhabditis elegans] 1.0E-12
blast CAB02775 Hypothetical protein C25D7.4 [Caenorhabditis elegans] ref|NP_506704.1| C25D7.4 [Caenorhabditis elegans] 2.0E-12
blast CAB02775 Hypothetical protein C25D7.4 [Caenorhabditis elegans] ref|NP_506704.1| C25D7.4 [Caenorhabditis elegans] 3.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.4E-34
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.4E-34
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507467.1 1 62-79
F59A1.8 1 62-79
SNAP00000002315 1 62-79
GENEFINDER00000002332 1 68-85
Sequence
Target Sequence 
>C. ELEGANS:178356_AT
acagcattttcagttggcgttggccgatttgaaggaaattttcgagcagaagctggaatt
gcagaagatctgcatcagacagacccagacacagaagaatgctccgattttgttggactg
gttcaagaaacactcgttcaagccgatttccacgaagagaatcttttttatcggaatgcc
gctcgccacaatgtcatcaattctcgcgtattttaaatcgggaactcttgaaaaaattac
aatggtgtgggcatttgaaccctatgatacgcagagacttttcgcgatggatcagtggaa
aaaagcaaaaattctccacttttgcggtggtgatgaaacagatccggagattgcaatcga
taatctttttaatttcaagcgattcgatatttttctcgataatgttaccgtttccgatgc
agagaagattagagatactatcatgagatccaagcatttcgagcactgcaaaatttacac
caggaagcaacgagacgaatcgagagttcatgccatcgctgatgttcttaagctcgcccc
atatcatcgaaaattccgtttccgatactctgtcgacgatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAGCATTTTCAGTTGGCGTTGGCC 124 109 36 Antisense
AACACTCGTTCAAGCCGATTTCCAC 654 135 164 Antisense
TTTTTTATCGGAATGCCGCTCGCCA 8 675 199 Antisense
GCCACAATGTCATCAATTCTCGCGT 397 279 220 Antisense
GCAGAGACTTTTCGCGATGGATCAG 406 313 306 Antisense
GATAATGTTACCGTTTCCGATGCAG 98 423 433 Antisense
GAGATCCAAGCATTTCGAGCACTGC 108 395 480 Antisense
ATCGAGAGTTCATGCCATCGCTGAT 110 37 534 Antisense
ATCGCTGATGTTCTTAAGCTCGCCC 559 37 550 Antisense
AGCTCGCCCCATATCATCGAAAATT 310 81 566 Antisense
CGTTTCCGATACTCTGTCGACGATT 393 241 592 Antisense
Sequence Source Affymetrix Proprietary Database