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[178355_at]

Description C29F7.1 /REP_DB=WormBase Gene ID /WP=CE08442 /TR=O17620 /GB=CAB07326.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 44      6grp_high1_10_10 > 44      4grp_highest_8_8 > 22      4grp_high_8_8 > 07      6grp_highest_nonorm > 80      6grp_total > 50      4grp_total > 0      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 417
1 2 3 4 range
A 222.2
(-3)
P 		233.1
(-2.7)
P 		232.6
(-2.7)
P 		445.8
(3)
P 		224
B 236.8
(-2.3)
P 		200.1
(-3)
P 		266.9
(-1.8)
P 		534
(3)
P 		334
C 205
(-2.4)
P 		166.2
(-3)
P 		299.1
(-1.1)
P 		583.1
(3)
P 		417
avr 221.3
(-2.6) 		199.8
(-3) 		266.2
(-1.8) 		521
(3) 		321

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 187
1 2 3 4 5 6 range
A 138
(-2.8)
P 		241.3
(2.1)
P 		261.1
(3)
P 		247.7
(2.4)
P 		134.6
(-3)
P 		175.9
(-1)
P 		127
B 208.4
(-0.4)
P 		267.7
(3)
P 		181.2
(-1.9)
P 		225.2
(0.6)
P 		162.3
(-3)
P 		226.7
(0.7)
P 		105
C 155.1
(-1.9)
P 		255.5
(1.3)
P 		247.2
(1)
P 		309
(3)
P 		121.9
(-3)
P 		149.1
(-2.1)
P 		187
avr 167.2
(-1.6) 		254.8
(2.7) 		229.8
(1.5) 		260.6
(3) 		139.6
(-3) 		183.9
(-0.8) 		121
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 80.9
(3)
P 		50.6
(-3)
P 		60.8
(-1)
P 		65.3
(-0.1)
P 		30
B 75.5
(-0.6)
P 		49.4
(-3)
P 		61.8
(-1.8)
P 		113.8
(3)
P 		64
C 67.9
(-0.9)
P 		47.8
(-3)
P 		104.2
(3)
P 		98.3
(2.4)
P 		56
avr 74.8
(0.5) 		49.3
(-3) 		75.6
(0.7) 		92.5
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 25.4
(-3)
P 		85.8
(3)
P 		56.9
(0.1)
P 		62.8
(0.7)
P 		40.6
(-1.5)
P 		42.8
(-1.3)
P 		60
B 72.5
(0.8)
P 		89.1
(3)
P 		44
(-3)
P 		59.6
(-0.9)
P 		65.9
(-0.1)
P 		84.5
(2.4)
P 		45
C 57.5
(-0.2)
P 		78
(3)
P 		62.9
(0.7)
P 		62.1
(0.5)
P 		39.4
(-3)
P 		49.9
(-1.4)
P 		39
avr 51.8
(-2.5) 		84.3
(3) 		54.6
(-2) 		61.5
(-0.8) 		48.6
(-3) 		59.1
(-1.2) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178355_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18031
Sequence Type Exemplar sequence
Representative Public ID C29F7.1 NCBI
Target Description C29F7.1 /REP_DB=WormBase Gene ID /WP=CE08442 /TR=O17620 /GB=CAB07326.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077833(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077833 NCBI Caenorhabditis elegans C29F7.1 (C29F7.1) mRNA, complete cds. 11/11 None
GENEFINDER00000036553 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13412549:13414463:1 11/11 None
C29F7.1 ENSEMBL cdna:known chromosome:CEL140:X:13412549:13414463:1 gene:C29F7.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000036546 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13412548-13414463(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C29F7.1
Entrez Gene 183016 Entrez gene
SwissProt O17620 EMBL-EBI
WormBase CE08442 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07326 Hypothetical protein C29F7.1 [Caenorhabditis elegans] ref|NP_510234.1| C29F7.1 [Caenorhabditis elegans] 0.0
blast CAE61448 Hypothetical protein CBG05337 [Caenorhabditis briggsae] 1.0E-148
blast CAB07327 Hypothetical protein C29F7.2 [Caenorhabditis elegans] ref|NP_510235.2| C29F7.2 [Caenorhabditis elegans] 1.0E-147
Sequence
Target Sequence 
>C. ELEGANS:178355_AT
tcttcctgattctgcgatgcgtgataccgttgatcttttcgaggcgatggtcaaaaccat
tgcagagaacatggcaaaatcgcctggcttagaaatcatttcaaaatacattgagaaaac
ttttgacaaggatccaagttttatgacaaaattcagtgatgaatatttggaaggaaaaag
aaaatccgtcctgactcacggagatctatggtctccccaaattttgtgggataaggatga
caatattgcgggaattattgactggcaagttggtcatcagggaagtcccatggaagatct
ccatagaattttgtcgactggtaccagtgtagaaaataggaacaagttgactaaaccact
gttggatcattattttgaaaaattgagcgctgggttggaagagaagggtgtgaaaatgcc
atggaccagggaagaagttgatgaagagtacaaccactgtttcagttatggtgcatcgat
aactatattttcaaatggaatctggtctagctctccaattcttcagaccgatggaaaacc
tgacccagcacgtatta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCCTGATTCTGCGATGCGTGAT 88 619 576 Antisense
GATACCGTTGATCTTTTCGAGGCGA 81 425 598 Antisense
AATCGCCTGGCTTAGAAATCATTTC 26 169 653 Antisense
AAATCCGTCCTGACTCACGGAGATC 398 117 757 Antisense
AGATCTATGGTCTCCCCAAATTTTG 369 63 777 Antisense
GCAAGTTGGTCATCAGGGAAGTCCC 608 321 840 Antisense
TAGAATTTTGTCGACTGGTACCAGT 509 651 879 Antisense
GAAGAGTACAACCACTGTTTCAGTT 86 339 1018 Antisense
TCAAATGGAATCTGGTCTAGCTCTC 418 629 1066 Antisense
GTCTAGCTCTCCAATTCTTCAGACC 605 469 1080 Antisense
GGAAAACCTGACCCAGCACGTATTA 134 527 1108 Antisense
Sequence Source Affymetrix Proprietary Database