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[178352_at]

Description R05D7.1 /REP_DB=WormBase Gene ID /WP=CE16295 /TR=Q9XVK8 /GB=CAB03215.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 06      4grp_highest_8_8 > 56      4grp_high_8_8 > 35      6grp_highest_nonorm > 11      6grp_total > 24      4grp_total > 45      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 869
1 2 3 4 range
A 1294.4
(1.1)
P 		1542.3
(3)
P 		857.6
(-2.3)
P 		760.8
(-3)
P 		782
B 1309.8
(3)
P 		1097.6
(0.8)
P 		824.2
(-2.1)
P 		736.1
(-3)
P 		574
C 1141
(3)
P 		1046.3
(1.8)
P 		672.9
(-3)
P 		1031.4
(1.6)
P 		468
avr 1248.4
(3) 		1228.7
(2.7) 		784.9
(-3) 		842.8
(-2.3) 		464

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2130
1 2 3 4 5 6 range
A 2760.6
(3)
P 		1673.4
(-0.1)
P 		1405.4
(-0.8)
P 		969.8
(-2)
P 		630.6
(-3)
P 		901.7
(-2.2)
P 		2130
B 1968.1
(3)
P 		1880.5
(2.6)
P 		1355.5
(-0.1)
P 		1182.6
(-1)
P 		791.6
(-3)
P 		794.9
(-3)
P 		1177
C 2209.8
(3)
P 		1526.8
(0.4)
P 		1483.6
(0.2)
P 		1091.9
(-1.3)
P 		918.5
(-2)
P 		662.7
(-3)
P 		1547
avr 2312.8
(3) 		1693.6
(0.6) 		1414.8
(-0.5) 		1081.4
(-1.8) 		780.2
(-3) 		786.4
(-3) 		1533
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 360
1 2 3 4 range
A 471.3
(3)
P 		334.8
(0.7)
P 		224.2
(-1.1)
P 		111.4
(-3)
P 		360
B 417.7
(3)
P 		271.1
(-0.4)
P 		191
(-2.2)
P 		156.9
(-3)
P 		261
C 377.7
(3)
P 		300.8
(0.7)
P 		234.5
(-1.2)
P 		173.9
(-3)
P 		204
avr 422.2
(3) 		302.2
(0.4) 		216.6
(-1.5) 		147.4
(-3) 		275

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 629
1 2 3 4 5 6 range
A 508.9
(1.7)
P 		595.2
(3)
P 		306.1
(-1.3)
P 		246
(-2.2)
P 		190.3
(-3)
P 		219.5
(-2.6)
P 		405
B 684.8
(3)
P 		625.9
(2.1)
P 		329.2
(-2.5)
P 		313.2
(-2.7)
P 		321.6
(-2.6)
P 		296.4
(-3)
P 		388
C 819.1
(3)
P 		465.9
(-0.5)
P 		377.6
(-1.4)
P 		219.6
(-3)
P 		297.2
(-2.2)
P 		221.8
(-3)
P 		600
avr 670.9
(3) 		562.3
(1.5) 		337.6
(-1.7) 		259.6
(-2.8) 		269.7
(-2.7) 		245.9
(-3) 		425
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178352_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2148
Sequence Type Exemplar sequence
Representative Public ID R05D7.1 NCBI
Target Description R05D7.1 /REP_DB=WormBase Gene ID /WP=CE16295 /TR=Q9XVK8 /GB=CAB03215.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060673
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060673 NCBI Caenorhabditis elegans R05D7.1 (R05D7.1) mRNA, complete cds. None
R05D7.1.1 ENSEMBL cdna:known chromosome:CEL140:I:12170530:12171987:-1 gene:R05D7.1 None
R05D7.1.2 ENSEMBL cdna:known chromosome:CEL140:I:12170482:12171655:-1 gene:R05D7.1 None
SNAP00000020573 ENSEMBL cdna:SNAP chromosome:CEL140:I:12170576:12171655:-1 None
GENEFINDER00000020579 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12170576:12171655:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12170506-12171795(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R05D7.1
Entrez Gene 187603 Entrez gene
SwissProt Q9XVK8 EMBL-EBI
WormBase CE32475 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03215 Hypothetical protein R05D7.1 [Caenorhabditis elegans] ref|NP_493074.2| R05D7.1 [Caenorhabditis elegans] 1.0E-76
blast CAE72993 Hypothetical protein CBG20338 [Caenorhabditis briggsae] 2.0E-67
blast CAE72993 Hypothetical protein CBG20338 [Caenorhabditis briggsae] 3.0E-67
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493074.2 3 34-56,80-102,117-139
R05D7.1.2 3 34-56,80-102,117-139
R05D7.1.1 3 34-56,80-102,117-139
SNAP00000020573 3 38-60,84-106,121-143
GENEFINDER00000020579 3 38-60,84-106,121-143
Sequence
Target Sequence 
>C. ELEGANS:178352_AT
atcaattctcgtcattcctaacattttcgaaatcttttcgcgtcgttcgaaaaagttcat
ttctcaattttttgctgactgtgagaagatgactgcagtttttcgttcgatgtccgtaac
aatgcaagcaaactacgactttccgacaattgtcaaccacagccgggcagttcaggtcct
gtgcacaatcttccaaatggtcttgatctacaccgaatcggcggccctatcatttctcac
attcatctgctactcgttgctcgtcggcatgcacatgctccatttggctcgtagatggta
ttacaatattgacgggcggtacgatgttcgtcagatcatcagagataacgagatcacgct
caaacttcaatacgctgttggtgagttgttcaaggctcatctctggaattccataggccc
catcttctccccactgctcctcggcttcttgtcctggaccttcgtcgagctcaacaacgg
actcgtccactcgcttttccatctttccgtcataactcagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCAATTCTCGTCATTCCTAACATT 646 25 39 Antisense
GATGACTGCAGTTTTTCGTTCGATG 67 413 126 Antisense
AGCAAACTACGACTTTCCGACAATT 313 71 165 Antisense
CAACCACAGCCGGGCAGTTCAGGTC 359 187 192 Antisense
AGTTCAGGTCCTGTGCACAATCTTC 175 63 207 Antisense
TCACATTCATCTGCTACTCGTTGCT 40 629 275 Antisense
CACATGCTCCATTTGGCTCGTAGAT 127 197 310 Antisense
TCACGCTCAAACTTCAATACGCTGT 146 627 392 Antisense
GTTCAAGGCTCATCTCTGGAATTCC 474 445 426 Antisense
ACCTTCGTCGAGCTCAACAACGGAC 334 83 496 Antisense
TTCCATCTTTCCGTCATAACTCAGG 70 701 535 Antisense
Sequence Source Affymetrix Proprietary Database