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[178351_at]

Description M151.2 /REP_DB=WormBase Gene ID /WP=CE12436 /TR=O17119 /GB=AAB70374.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 2
(-3)
A 		3.1
(-2)
A 		3.3
(-1.8)
A 		8.4
(3)
A 		6
B 2.9
(-3)
A 		2.9
(-3)
A 		4.5
(3)
A 		4.5
(3)
A 		2
C 6.3
(3)
A 		5
(-3)
A 		6
(1.6)
A 		5.7
(0.2)
A 		1
avr 3.7
(-3) 		3.7
(-3) 		4.6
(-0.8) 		6.2
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 3.7
(-1.6)
A 		2.2
(-3)
A 		6.9
(1.4)
A 		8.6
(3)
A 		5.3
(-0.1)
A 		2.9
(-2.3)
A 		6
B 4.1
(-2.5)
A 		5.7
(-1.2)
A 		10.9
(3)
A 		6.4
(-0.6)
A 		3.5
(-3)
A 		3.7
(-2.8)
A 		7
C 8.4
(-0.8)
A 		17.7
(3)
A 		3.1
(-2.9)
A 		4
(-2.6)
A 		2.9
(-3)
A 		4.8
(-2.2)
A 		15
avr 5.4
(-1) 		8.5
(3) 		7
(1.1) 		6.3
(0.2) 		3.9
(-2.9) 		3.8
(-3) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.7
(-3)
A 		0.7
(-3)
A 		0.9
(-0.6)
A 		1.2
(3)
A 		1
B 0.9
(1)
A 		0.7
(-3)
A 		1
(3)
A 		1
(3)
A 		0
C 2.1
(3)
A 		1.4
(-0.8)
A 		2.1
(3)
A 		1
(-3)
A 		1
avr 1.2
(1.5) 		0.9
(-3) 		1.3
(3) 		1.1
(0) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 0.7
(-3)
A 		0.8
(-2.6)
A 		1.5
(0.2)
A 		2.2
(3)
A 		1.6
(0.6)
A 		0.7
(-3)
A 		2
B 1.4
(-3)
A 		1.9
(-0.5)
A 		2.6
(3)
A 		1.7
(-1.5)
A 		1.4
(-3)
A 		1.4
(-3)
A 		1
C 3.1
(-0)
A 		5.4
(3)
A 		0.8
(-3)
A 		0.8
(-3)
A 		0.9
(-2.9)
A 		1.6
(-2)
A 		5
avr 1.7
(-1) 		2.7
(3) 		1.6
(-1.4) 		1.6
(-1.4) 		1.3
(-2.6) 		1.2
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178351_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4322
Sequence Type Exemplar sequence
Representative Public ID M151.2 NCBI
Target Description M151.2 /REP_DB=WormBase Gene ID /WP=CE12436 /TR=O17119 /GB=AAB70374.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062199(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062199 NCBI Caenorhabditis elegans M151.2 (M151.2) mRNA, complete cds. 11/11 None
SNAP00000044218 ENSEMBL cdna:SNAP chromosome:CEL140:II:3631129:3633872:1 9/11 None
GENEFINDER00000044227 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3627192:3634684:1 10/11 None
M151.2 ENSEMBL cdna:known chromosome:CEL140:II:3631438:3634127:1 gene:M151.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3631436-3634126(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M151.2
Entrez Gene 187479 Entrez gene
SwissProt O17119 EMBL-EBI
WormBase CE12436 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494600 M151.2 [Caenorhabditis elegans] gb|AAB70374.1| Hypothetical protein M151.2 [Caenorhabditis elegans] 0.0
blast NP_494599 M151.3 [Caenorhabditis elegans] gb|AAB70373.1| Hypothetical protein M151.3 [Caenorhabditis elegans] 0.0
blast T32297 hypothetical protein M151.4 - Caenorhabditis elegans 1.0E-149
blast NP_494597 M151.7 [Caenorhabditis elegans] gb|AAK77624.1| Hypothetical protein M151.7 [Caenorhabditis elegans] 1.0E-109
blast T32297 hypothetical protein M151.4 - Caenorhabditis elegans 1.0E-109
blast NP_494597 M151.7 [Caenorhabditis elegans] gb|AAK77624.1| Hypothetical protein M151.7 [Caenorhabditis elegans] 1.0E-101
blast T32297 hypothetical protein M151.4 - Caenorhabditis elegans 1.0E-101
Protein Domains
Database ID Description E-Value
scop a.1.1.Globins All alpha proteins; Globin-like; Globin-like; Globins 1.89999997615814
scop a.1.1.Globins All alpha proteins; Globin-like; Globin-like; Globins 3.29999995231628
scop a.1.1.Globins All alpha proteins; Globin-like; Globin-like; Globins 2.70000004768372
Sequence
Target Sequence 
>C. ELEGANS:178351_AT
aattctggtagacaagttcgcgcaaaagtcgaaggtgctgtcggcctccaactcgaaaat
cgctcgacttgaacggaaaaacgagaagctcagtgtattttcttcagaattttacatttc
aattttcagattgccgctcagccacattctccacaagcttcaactcggacacctcaacga
gcaccgcacccgagtctcacgggcagctggacaatgtgttgcagcttccaacggcttctg
ctctcaatggggttaccaaggaaaatcacttagccgagtcattgaaacaaattccattgt
tacgacttccgaagaaagctctcttcagaagcttccgtcaaatggctattcaagacttgc
ttccgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCTGGTAGACAAGTTCGCGCAA 41 169 1635 Antisense
AAAAGTCGAAGGTGCTGTCGGCCTC 386 131 1658 Antisense
TCAATTTTCAGATTGCCGCTCAGCC 652 633 1753 Antisense
AGTCTCACGGGCAGCTGGACAATGT 148 61 1827 Antisense
AATGTGTTGCAGCTTCCAACGGCTT 74 163 1847 Antisense
CTTCTGCTCTCAATGGGGTTACCAA 173 221 1869 Antisense
GGAAAATCACTTAGCCGAGTCATTG 24 529 1894 Antisense
CAAATTCCATTGTTACGACTTCCGA 75 193 1922 Antisense
AAAGCTCTCTTCAGAAGCTTCCGTC 116 125 1949 Antisense
GAAGCTTCCGTCAAATGGCTATTCA 627 341 1962 Antisense
TGGCTATTCAAGACTTGCTTCCGCC 36 547 1977 Antisense
Sequence Source Affymetrix Proprietary Database