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[178349_at]

Description F33H2.2 /REP_DB=WormBase Gene ID /WP=CE17765 /TR=O62219 /GB=CAB04264.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 78      4grp_high_8_8 > 49      6grp_highest_nonorm > 83      6grp_total > 69      4grp_total > 62      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 192
1 2 3 4 range
A 396.9
(3)
P 		267.6
(-1.1)
P 		309.4
(0.2)
P 		206.7
(-3)
P 		190
B 337.2
(3)
P 		288.2
(-0.2)
P 		286.7
(-0.3)
P 		245.1
(-3)
P 		92
C 390.7
(3)
P 		309.2
(0.4)
P 		331.8
(1.1)
P 		204.6
(-3)
A 		186
avr 374.9
(3) 		288.3
(-0.3) 		309.3
(0.5) 		218.8
(-3) 		156

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 392
1 2 3 4 5 6 range
A 394.1
(-1.6)
P 		391.8
(-1.7)
P 		314.2
(-3)
P 		406.7
(-1.4)
P 		395.4
(-1.6)
P 		667.1
(3)
P 		353
B 443.1
(0)
P 		300.2
(-2.5)
P 		274.7
(-3)
P 		385.3
(-1)
P 		378
(-1.2)
P 		610.6
(3)
P 		336
C 441.6
(0.6)
P 		296.5
(-3)
P 		407.1
(-0.3)
P 		383
(-0.9)
P 		477.9
(1.5)
P 		540.3
(3)
P 		244
avr 426.3
(-0.9) 		329.5
(-3) 		332
(-2.9) 		391.7
(-1.7) 		417.1
(-1.1) 		606
(3) 		277
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 144.5
(3)
P 		58.1
(-1.5)
P 		80.9
(-0.3)
P 		30.3
(-3)
P 		114
B 107.5
(3)
P 		71.2
(-0.9)
P 		66.4
(-1.5)
P 		52.2
(-3)
P 		55
C 129.3
(3)
P 		88.9
(0.4)
P 		115.7
(2.1)
P 		34.5
(-3)
A 		95
avr 127.1
(3) 		72.7
(-0.7) 		87.7
(0.3) 		39
(-3) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 161
1 2 3 4 5 6 range
A 72.6
(-2.7)
P 		139.3
(1.5)
P 		68.4
(-3)
P 		103.2
(-0.8)
P 		119.3
(0.2)
P 		162.4
(3)
P 		94
B 154.2
(0.3)
P 		99.9
(-1.8)
P 		66.7
(-3)
P 		102.1
(-1.7)
P 		153.6
(0.2)
P 		227.7
(3)
P 		161
C 163.7
(2)
P 		90.5
(-2.2)
P 		103.6
(-1.5)
P 		77
(-3)
P 		154.6
(1.5)
P 		180.9
(3)
P 		104
avr 130.2
(-0.3) 		109.9
(-1.4) 		79.6
(-3) 		94.1
(-2.2) 		142.5
(0.4) 		190.3
(3) 		111
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178349_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.482
Sequence Type Exemplar sequence
Representative Public ID F33H2.2 NCBI
Target Description F33H2.2 /REP_DB=WormBase Gene ID /WP=CE17765 /TR=O62219 /GB=CAB04264.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061218(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061218 NCBI Caenorhabditis elegans F33H2.2 (F33H2.2) mRNA, complete cds. 11/11 A 
SNAP00000009480 ENSEMBL cdna:SNAP chromosome:CEL140:I:15031338:15037883:1 11/11 None
GENEFINDER00000009492 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:15031338:15035800:1 11/11 None
F33H2.2 ENSEMBL cdna:known chromosome:CEL140:I:15031258:15035870:1 gene:F33H2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:15031268-15035731(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F33H2.2
Entrez Gene 173371 Entrez gene
SwissProt O62219 EMBL-EBI
WormBase CE17765 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.2440.1.S1_AT similar to F33H2.2 cfa
DROSGENOME1:154005_AT dm
DROSOPHILA_2:1635979_AT dm
HG-U95AV2:33761_S_AT family with sequence similarity 91, member A1 hs
HG-U133_PLUS_2:237045_AT family with sequence similarity 91, member A1 hs
HG-U133B:237045_AT family with sequence similarity 91, member A1 hs
HU35KSUBB:RC_N33223_AT family with sequence similarity 91, member A1 hs
HU35KSUBD:RC_AA195323_AT family with sequence similarity 91, member A1 hs
U133_X3P:HS.295901.3.A1_3P_X_AT family with sequence similarity 91, member A1 hs
U133_X3P:HS.295901.3.A1_3P_AT family with sequence similarity 91, member A1 hs
U133_X3P:HS.188695.0.A1_3P_AT family with sequence similarity 91, member A1 hs
HG-U133_PLUS_2:226294_X_AT family with sequence similarity 91, member A1 hs
HG-U133B:226294_X_AT family with sequence similarity 91, member A1 hs
HG-U95B:43718_AT family with sequence similarity 91, member A1 hs
HG-U95C:65563_AT family with sequence similarity 91, member A1 hs
HG-U95E:75593_AT family with sequence similarity 91, member A1 hs
HG-U95E:89411_AT family with sequence similarity 91, member A1 hs
HG-U95D:69291_I_AT Family with sequence similarity 91, member A1 hs
MG-U74AV2:98013_AT DNA segment, Chr 15, ERATO Doi 621, expressed mm
MU11KSUBA:AA277199_S_AT DNA segment, Chr 15, ERATO Doi 621, expressed mm
MG-U74BV2:114305_AT DNA segment, Chr 15, ERATO Doi 621, expressed mm
MOE430A:1433724_AT DNA segment, Chr 15, ERATO Doi 621, expressed mm
MOUSE430A_2:1433724_AT DNA segment, Chr 15, ERATO Doi 621, expressed mm
MOUSE430_2:1433724_AT DNA segment, Chr 15, ERATO Doi 621, expressed mm
MOE430A:1454705_AT DNA segment, Chr 15, ERATO Doi 621, expressed mm
MOUSE430A_2:1454705_AT DNA segment, Chr 15, ERATO Doi 621, expressed mm
MOUSE430_2:1454705_AT DNA segment, Chr 15, ERATO Doi 621, expressed mm
MU19KSUBC:TC40055_AT DNA segment, Chr 15, ERATO Doi 621, expressed (D15Ertd621e), mRNA mm
Protein Similarities
Method ID Description E-Value
blast CAB04264 Hypothetical protein F33H2.2 [Caenorhabditis elegans] ref|NP_493619.1| F33H2.2 [Caenorhabditis elegans] 0.0
blast CAE72540 Hypothetical protein CBG19722 [Caenorhabditis briggsae] 0.0
blast ABB17071 skeletal muscle cells re-entry induced [Mus musculus] dbj|BAE23306.1| unnamed protein product [Mus musculus] 1.0E-166
Sequence
Target Sequence 
>C. ELEGANS:178349_AT
gttcaatcagtacctcttgacagtgaagattgtgataaaatgatccatgtaccatttcca
ttcgaagatttggagtgtgaaactgcattctgcaatcatccagcgatcagaaagctccga
gagcagctatcactagattttacagcaggatatgtaattttacttaaaaaatctggaaaa
tctatcacgacatcaggctcagacatcagtggaagaacaaaagcggagagcaatattatg
caggatgtctcattaccaaaagatggtggtttactcaaaaaactgctgccaggcacttct
ttcgacgattttctactattggattgtgtttttggagtaccgttgttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCAATCAGTACCTCTTGACAGTG 420 445 1852 Antisense
TGTACCATTTCCATTCGAAGATTTG 453 559 1899 Antisense
TGCATTCTGCAATCATCCAGCGATC 468 579 1935 Antisense
CATCCAGCGATCAGAAAGCTCCGAG 552 209 1948 Antisense
GCTCCGAGAGCAGCTATCACTAGAT 348 299 1965 Antisense
AAATCTATCACGACATCAGGCTCAG 220 115 2029 Antisense
CATCAGGCTCAGACATCAGTGGAAG 244 195 2042 Antisense
TTATGCAGGATGTCTCATTACCAAA 115 681 2087 Antisense
AAAACTGCTGCCAGGCACTTCTTTC 693 129 2130 Antisense
GGCACTTCTTTCGACGATTTTCTAC 355 535 2143 Antisense
TGTGTTTTTGGAGTACCGTTGTTCA 281 555 2176 Antisense
Sequence Source Affymetrix Proprietary Database