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[178348_s_at]

Description W09C5.8 /REP_DB=WormBase Gene ID /WP=CE20171 /TR=Q9U329 /GB=CAB63334.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 10      4grp_highest_8_8 > 14      4grp_high_8_8 > 14      6grp_highest_nonorm > 29      6grp_total > 32      4grp_total > 17      6grp_highest_sub > De      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7651
1 2 3 4 range
A 13102.6
(-3)
P 		14599.9
(-1.7)
P 		14584.7
(-1.7)
P 		19882.3
(3)
P 		6780
B 13927.9
(-3)
P 		14352.4
(-2.4)
P 		14720.6
(-1.8)
P 		18055.2
(3)
P 		4127
C 12231.3
(-3)
P 		14261.5
(-1)
P 		12731.5
(-2.5)
P 		18403.2
(3)
P 		6172
avr 13087.3
(-3) 		14404.6
(-1.6) 		14012.3
(-2) 		18780.2
(3) 		5693

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4535
1 2 3 4 5 6 range
A 15045.1
(3)
P 		12616.1
(-1.3)
P 		14534.4
(2.1)
P 		14163
(1.4)
P 		11670.6
(-3)
P 		11645.5
(-3)
P 		3400
B 12472
(1.4)
P 		13130.7
(2.8)
P 		11627
(-0.5)
P 		13208.9
(3)
P 		12020.5
(0.4)
P 		10510.4
(-3)
P 		2699
C 12652.5
(-0.2)
P 		12469.3
(-0.5)
P 		14518
(3)
P 		11836.9
(-1.6)
P 		13053.3
(0.5)
P 		10990.8
(-3)
P 		3527
avr 13389.9
(2.6) 		12738.7
(1) 		13559.8
(3) 		13069.6
(1.8) 		12248.1
(-0.1) 		11048.9
(-3) 		2511
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1860
1 2 3 4 range
A 4770.6
(3)
P 		3169.2
(-2.2)
P 		3812.7
(-0.1)
P 		2910.4
(-3)
P 		1860
B 4441.5
(3)
P 		3544.7
(-2.2)
P 		3411.1
(-3)
P 		3847.6
(-0.5)
P 		1030
C 4048.9
(1.3)
P 		4100.3
(1.5)
P 		4437.3
(3)
P 		3103.1
(-3)
P 		1334
avr 4420.3
(3) 		3604.7
(-1.3) 		3887
(0.2) 		3287
(-3) 		1133

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2503
1 2 3 4 5 6 range
A 2773.4
(-3)
P 		4486.9
(3)
P 		3165.3
(-1.6)
P 		3592.1
(-0.1)
P 		3521.7
(-0.4)
P 		2835.3
(-2.8)
P 		1714
B 4339.7
(1.4)
P 		4370.7
(1.5)
P 		2823.4
(-3)
P 		3498.6
(-1)
P 		4883.8
(3)
P 		3919.3
(0.2)
P 		2060
C 4689.7
(3)
P 		3804.8
(0.7)
P 		3695.1
(0.4)
P 		2380.4
(-3)
P 		4223.9
(1.8)
P 		3679.3
(0.4)
P 		2309
avr 3934.3
(1.4) 		4220.8
(3) 		3227.9
(-2.6) 		3157
(-3) 		4209.8
(2.9) 		3478
(-1.2) 		1064
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178348_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2111
Sequence Type Exemplar sequence
Representative Public ID W09C5.8 NCBI
Target Description W09C5.8 /REP_DB=WormBase Gene ID /WP=CE20171 /TR=Q9U329 /GB=CAB63334.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060993(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060993 NCBI Caenorhabditis elegans W09C5.8 (W09C5.8) mRNA, complete cds. 11/11 None
SNAP00000012968 ENSEMBL cdna:SNAP chromosome:CEL140:I:13661110:13667244:-1 11/11 None
GENEFINDER00000013009 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13666600:13667244:-1 11/11 None
W09C5.8.3 ENSEMBL cdna:known chromosome:CEL140:I:13666286:13667252:-1 gene:W09C5.8 11/11 None
W09C5.8.2 ENSEMBL cdna:known chromosome:CEL140:I:13666286:13667458:-1 gene:W09C5.8 11/11 None
W09C5.8.1 ENSEMBL cdna:known chromosome:CEL140:I:13666286:13667246:-1 gene:W09C5.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13666530-13667160(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W09C5.8
Entrez Gene 173237 Entrez gene
SwissProt Q9U329 EMBL-EBI
WormBase CE20171 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1597996_AT similar to cytochrome c oxidase subunit IV isoform 2 precursor cfa
CANINE_2:CFA.8272.1.A1_AT similar to cytochrome c oxidase subunit IV isoform 2 precursor cfa
CANINE_2:CFAAFFX.11455.1.S1_AT similar to cytochrome c oxidase subunit IV isoform 2 precursor cfa
DROSOPHILA_2:1640797_AT dm
DROSGENOME1:153344_AT dm
U133_X3P:HS.277101.0.S1_3P_AT cytochrome c oxidase subunit IV isoform 2 (lung) hs
HG-U133_PLUS_2:232761_AT cytochrome c oxidase subunit IV isoform 2 (lung) hs
HG-U133B:232761_AT cytochrome c oxidase subunit IV isoform 2 (lung) hs
MOUSE430_2:1421373_AT cytochrome c oxidase subunit IV isoform 2 mm
MOE430A:1421373_AT cytochrome c oxidase subunit IV isoform 2 mm
MOUSE430A_2:1421373_AT cytochrome c oxidase subunit IV isoform 2 mm
MU19KSUBB:TC33919_AT Cytochrome c oxidase subunit IV isoform 2 (Cox4i2), mRNA mm
RG-U34A:RC_H31232_AT cytochrome c oxidase subunit IV isoform 2 rn
RAE230A:1368648_AT cytochrome c oxidase subunit IV isoform 2 rn
RAT230_2:1368648_AT cytochrome c oxidase subunit IV isoform 2 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4129 cytochrome-c oxidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB63334 Hypothetical protein W09C5.8 [Caenorhabditis elegans] ref|NP_493394.1| W09C5.8 [Caenorhabditis elegans] 1.0E-100
blast CAB63334 Hypothetical protein W09C5.8 [Caenorhabditis elegans] ref|NP_493394.1| W09C5.8 [Caenorhabditis elegans] 7.0E-99
blast CAE72582 Hypothetical protein CBG19770 [Caenorhabditis briggsae] 1.0E-93
Protein Domains
Database ID Description E-Value
Pfam IPR000054 EMBL-EBI Ribosomal protein L31e 6.0E-56
Pfam IPR004203 EMBL-EBI Cytochrome c oxidase subunit IV 1.7E-78
Pfam IPR004203 EMBL-EBI Cytochrome c oxidase subunit IV 7.5E-78
Pfam IPR004203 EMBL-EBI Cytochrome c oxidase subunit IV 7.5E-78
Sequence
Target Sequence 
>C. ELEGANS:178348_S_AT
gacgcgagctcgtcggatacggagcaaatggagataacatctaccaagatcgtctcgact
actggtatccagctattcgattccgcaaggaggacagtgtgattgccccaattcgcgcca
aggagcaagccgactggaagaacttgtctgctgaggagaagaagctcttgtaccgctaca
gcttccgtcaaacgctgtccgaattcgaggctccaaccggatactggaaggtgatctccg
ccgttatcctctccgtgctcggactttgcacctattatgctgttcttctcaacgtctgcg
tgtacccagaactgccgccaaccttccagaacgagtacaaggaggctcaggttgagcgtg
cgcttgtgctcgagaagggacaattcctcggtgcacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGCGAGCTCGTCGGATACGGAGC 252 381 107 Antisense
TATCCAGCTATTCGATTCCGCAAGG 507 657 172 Antisense
AGGAGGACAGTGTGATTGCCCCAAT 512 55 194 Antisense
CCAATTCGCGCCAAGGAGCAAGCCG 303 277 214 Antisense
TCCGTCAAACGCTGTCCGAATTCGA 251 595 290 Antisense
ATACTGGAAGGTGATCTCCGCCGTT 693 23 327 Antisense
GCTCGGACTTTGCACCTATTATGCT 417 299 363 Antisense
TATTATGCTGTTCTTCTCAACGTCT 502 663 379 Antisense
CAACGTCTGCGTGTACCCAGAACTG 104 187 396 Antisense
TTGAGCGTGCGCTTGTGCTCGAGAA 291 705 458 Antisense
AGAAGGGACAATTCCTCGGTGCACC 325 75 479 Antisense
Sequence Source Affymetrix Proprietary Database