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[178344_at]

Description C40H5.3 /REP_DB=WormBase Gene ID /WP=CE08651 /TR=Q9U3M9 /GB=CAB03954.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 34      6grp_total > 0      4grp_total > 41      6grp_total_sub > Hat      6grp_high1_sub > 02      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 211
1 2 3 4 range
A 45.2
(-3)
A 		190.5
(1.1)
P 		256.6
(3)
P 		126.6
(-0.7)
A 		211
B 100.1
(-1.1)
M 		151.7
(3)
P 		139.9
(2.1)
P 		75.4
(-3)
A 		76
C 83.2
(-3)
A 		191.4
(3)
P 		131.1
(-0.3)
P 		137.2
(-0)
P 		108
avr 76.2
(-3) 		177.9
(3) 		175.9
(2.9) 		113.1
(-0.8) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 117.2
(-0.2)
P 		161.9
(3)
P 		78.3
(-3)
P 		138
(1.3)
P 		123.5
(0.2)
P 		109.5
(-0.8)
P 		84
B 87.3
(-1.5)
A 		131.6
(3)
P 		72.4
(-3)
A 		131.2
(3)
P 		86.5
(-1.6)
P 		106.8
(0.5)
P 		59
C 73
(-3)
A 		154.7
(3)
P 		93.9
(-1.5)
A 		91.3
(-1.7)
A 		117
(0.2)
P 		101.8
(-0.9)
P 		82
avr 92.5
(-2) 		149.4
(3) 		81.5
(-3) 		120.2
(0.4) 		109
(-0.6) 		106
(-0.8) 		68
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 16.4
(-3)
A 		41.3
(-0.1)
P 		67.1
(3)
P 		18.5
(-2.8)
A 		51
B 31.9
(1.4)
M 		37.5
(3)
P 		32.4
(1.6)
P 		16.1
(-3)
A 		21
C 27.5
(-2.2)
A 		55
(3)
P 		45.7
(1.3)
P 		23.1
(-3)
P 		32
avr 25.3
(-1.7) 		44.6
(2.2) 		48.4
(3) 		19.2
(-3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 21.6
(-2.3)
P 		57.6
(3)
P 		17
(-3)
P 		35
(-0.3)
P 		37.3
(-0)
P 		26.7
(-1.6)
P 		41
B 30.4
(-0.1)
A 		43.8
(3)
P 		17.6
(-3)
A 		34.8
(0.9)
P 		35.1
(1)
P 		39.8
(2.1)
P 		26
C 27.1
(-1.2)
A 		47.2
(3)
P 		23.9
(-1.9)
A 		18.4
(-3)
A 		37.9
(1.1)
P 		34.1
(0.3)
P 		29
avr 26.4
(-1.6) 		49.5
(3) 		19.5
(-3) 		29.4
(-1) 		36.8
(0.5) 		33.5
(-0.2) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178344_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17091
Sequence Type Exemplar sequence
Representative Public ID C40H5.3 NCBI
Target Description C40H5.3 /REP_DB=WormBase Gene ID /WP=CE08651 /TR=Q9U3M9 /GB=CAB03954.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077567(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077567 NCBI Caenorhabditis elegans C40H5.3 (C40H5.3) mRNA, complete cds. 11/11 None
SNAP00000010971 ENSEMBL cdna:SNAP chromosome:CEL140:X:11759183:11764165:1 11/11 None
GENEFINDER00000010978 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11759183:11764165:1 11/11 None
C40H5.3 ENSEMBL cdna:known chromosome:CEL140:X:11759183:11760988:1 gene:C40H5.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11759182-11760988(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C40H5.3
Entrez Gene 183370 Entrez gene
SwissProt Q9U3M9 EMBL-EBI
WormBase CE33982 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03954 Hypothetical protein C40H5.3 [Caenorhabditis elegans] ref|NP_509968.2| C40H5.3 [Caenorhabditis elegans] 0.0
blast CAB03955 Hypothetical protein C40H5.4 [Caenorhabditis elegans] ref|NP_509969.1| C40H5.4 [Caenorhabditis elegans] 0.0
blast CAE57335 Hypothetical protein CBG00264 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001466 EMBL-EBI Beta-lactamase 9.4E-74
Sequence
Target Sequence 
>C. ELEGANS:178344_AT
cacaggaccagtcttcatcaagccagcaccaatgacatttgatgagctcatcaaagccgt
cagagaaaacgaagctcgagacttggcactaacacaagtttgcgggcaagaaggaaagcc
cggtgaaatcacatttaccacttattgggaacgcgttccaggagtcgaatttcatatttg
gtttcctggacaaccacatgcagacgagcagaaagagcatttcgaaaataatggctatcg
tttgacgtacctctgtggttactcggaggctggcaaagggaagtatgttggagtgtggca
gaaacctgtgaaatcagaagcacaatatgaagctcactatgggctcacgatggaagcatg
tatgcaaaaagataaaatccttgtacaaaagggttttgtggccacttctcttcgagtttt
caacaataagaatcaagtgctttgtactggaatttgggaaaatcgaaacggtagaagtag
tgtacaagtgggacaaaacttagaaactatgtacaggaatatgcagcgcaaccctaacat
gattccaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACAGGACCAGTCTTCATCAAGCCA 619 195 540 Antisense
ATCAAGCCAGCACCAATGACATTTG 16 25 556 Antisense
GATGAGCTCATCAAAGCCGTCAGAG 518 409 580 Antisense
GAAGCTCGAGACTTGGCACTAACAC 453 343 610 Antisense
GGGAACGCGTTCCAGGAGTCGAATT 551 489 686 Antisense
GTTTCCTGGACAACCACATGCAGAC 312 451 720 Antisense
ATGGCTATCGTTTGACGTACCTCTG 209 51 770 Antisense
TGACGTACCTCTGTGGTTACTCGGA 519 569 782 Antisense
GCTCACTATGGGCTCACGATGGAAG 115 301 871 Antisense
GCCACTTCTCTTCGAGTTTTCAACA 553 279 940 Antisense
GCGCAACCCTAACATGATTCCAAGA 41 287 1065 Antisense
Sequence Source Affymetrix Proprietary Database