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[178343_s_at]

Description F58G1.5 /REP_DB=WormBase Gene ID /WP=CE17925 /TR=O62271 /GB=CAB04520.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 56      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 844
1 2 3 4 range
A 56.6
(-3)
A 		764
(2)
P 		900.3
(3)
P 		133.5
(-2.5)
P 		844
B 79.6
(-3)
A 		753.9
(2.4)
P 		833.7
(3)
P 		98.6
(-2.8)
A 		754
C 63.6
(-3)
A 		689
(1.7)
P 		857.4
(3)
P 		63.2
(-3)
A 		794
avr 66.6
(-3) 		735.6
(2) 		863.8
(3) 		98.4
(-2.8) 		797

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 554
1 2 3 4 5 6 range
A 59.5
(-3)
A 		407.9
(1.3)
P 		238.6
(-0.8)
P 		544.3
(3)
P 		510.2
(2.6)
P 		168
(-1.7)
P 		485
B 75.7
(-3)
A 		362
(0.3)
P 		229
(-1.2)
P 		492.6
(1.8)
P 		597.6
(3)
P 		147.3
(-2.2)
P 		522
C 43.5
(-3)
A 		319.3
(0.4)
P 		277.3
(-0.1)
P 		532.5
(3)
P 		535.4
(3)
P 		176.8
(-1.4)
P 		492
avr 59.6
(-3) 		363.1
(0.7) 		248.3
(-0.7) 		523.1
(2.7) 		547.7
(3) 		164
(-1.7) 		488
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 288
1 2 3 4 range
A 20.6
(-3)
A 		165.9
(1.1)
P 		235.4
(3)
P 		19.5
(-3)
P 		216
B 25.4
(-2.8)
A 		186.2
(2.8)
P 		193.2
(3)
P 		21
(-3)
A 		172
C 21
(-2.8)
A 		198.1
(0.9)
P 		298.8
(3)
P 		10.7
(-3)
A 		288
avr 22.3
(-2.9) 		183.4
(1.4) 		242.5
(3) 		17.1
(-3) 		225

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 232
1 2 3 4 5 6 range
A 11
(-3)
A 		145.1
(2.6)
P 		52
(-1.3)
P 		138
(2.3)
P 		154
(3)
P 		40.9
(-1.7)
P 		143
B 26.3
(-3)
A 		120.5
(-0.4)
P 		55.6
(-2.2)
P 		130.5
(-0.1)
P 		242.8
(3)
P 		54.9
(-2.2)
P 		217
C 16.1
(-3)
A 		97.4
(0.1)
P 		70.6
(-0.9)
P 		107.1
(0.5)
P 		173.2
(3)
P 		59.2
(-1.4)
P 		157
avr 17.8
(-3) 		121
(0.6) 		59.4
(-1.6) 		125.2
(0.7) 		190
(3) 		51.7
(-1.8) 		172
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178343_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3746
Sequence Type Exemplar sequence
Representative Public ID F58G1.5 NCBI
Target Description F58G1.5 /REP_DB=WormBase Gene ID /WP=CE17925 /TR=O62271 /GB=CAB04520.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064355(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064355 NCBI Caenorhabditis elegans F58G1.5 (F58G1.5) mRNA, complete cds. 11/11 None
SNAP00000003692 ENSEMBL cdna:SNAP chromosome:CEL140:II:12933874:12937701:-1 11/11 None
GENEFINDER00000003702 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12933874:12935254:-1 11/11 None
F58G1.5 ENSEMBL cdna:known chromosome:CEL140:II:12933818:12935254:-1 gene:F58G1.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12933870-12935251(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F58G1.5
Entrez Gene 174935 Entrez gene
SwissProt O62271 EMBL-EBI
WormBase CE17925 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
16042 lipid catabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16298 lipase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04520 Hypothetical protein F58G1.5 [Caenorhabditis elegans] ref|NP_496756.1| F58G1.5 [Caenorhabditis elegans] 1.0E-178
blast CAE59397 Hypothetical protein CBG02760 [Caenorhabditis briggsae] 1.0E-168
blast CAE63244 Hypothetical protein CBG07609 [Caenorhabditis briggsae] 3.0E-84
Protein Domains
Database ID Description E-Value
Pfam IPR002918 EMBL-EBI Lipase, class 2 1.0E-126
Pfam IPR002918 EMBL-EBI Lipase, class 2 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:178343_S_AT
gcaggttcgatctctaattgtggctgtccgcttgtacactggccgcaacgttgatgtgat
cggtttctcgcttggtgttccggtgtcaagaaaagcaattcttggaggccgttgcgtcga
caccggagagtaccttggagaaccgctgacacgtgtcgttgacacctacatcggagtagc
tggaccaaatcgtggagcttctccacaactcggaccactttcagtcccggcttgcgcact
ctctatcaccccgatctgcaattcggtgaacggtctttactctggaaactgcccagcaca
aagtgaattccttcaggacatcaacaaatttgcacattatgaaggacaatacacctactc
aatttacacgcagaaggaccaaatggttggatacactgtttgtggacagctaacatcccc
actc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGGTTCGATCTCTAATTGTGGCT 157 311 390 Antisense
TAATTGTGGCTGTCCGCTTGTACAC 627 633 404 Antisense
GTACACTGGCCGCAACGTTGATGTG 651 453 423 Antisense
CGTCGACACCGGAGAGTACCTTGGA 378 243 504 Antisense
AGAACCGCTGACACGTGTCGTTGAC 94 73 528 Antisense
TGTCGTTGACACCTACATCGGAGTA 220 557 543 Antisense
CCACAACTCGGACCACTTTCAGTCC 472 273 592 Antisense
CTATCACCCCGATCTGCAATTCGGT 164 225 632 Antisense
TTCGGTGAACGGTCTTTACTCTGGA 6 661 651 Antisense
TACACCTACTCAATTTACACGCAGA 645 643 739 Antisense
TTGTGGACAGCTAACATCCCCACTC 179 709 789 Antisense
Sequence Source Affymetrix Proprietary Database