[Home] | [Total List]

[178341_at]

Description T05F1.7 /REP_DB=WormBase Gene ID /WP=CE13255 /TR=O18032 /GB=CAB04696.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 60      4grp_total > 10      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 1.6
(-2.9)
A 		1.5
(-2.9)
A 		1
(-3)
A 		34.9
(3)
A 		34
B 2.2
(3)
A 		2.2
(3)
A 		1.1
(-1.7)
A 		0.8
(-3)
A 		1
C 5.1
(-2.8)
A 		8.3
(-1.8)
A 		4.3
(-3)
A 		24.8
(3)
A 		21
avr 3
(-2.7) 		4
(-2.4) 		2.1
(-3) 		20.2
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 2.2
(-2.5)
A 		8.4
(-0.4)
A 		18.7
(3)
A 		1.4
(-2.7)
A 		0.6
(-3)
A 		8.1
(-0.5)
A 		18
B 3.2
(2.8)
A 		2.6
(1.6)
A 		1.4
(-0.9)
A 		1.2
(-1.3)
A 		3.3
(3)
A 		0.4
(-3)
A 		3
C 1.4
(-2.9)
A 		2.3
(-2.6)
A 		2.7
(-2.5)
A 		25.3
(3)
A 		0.8
(-3)
A 		0.8
(-3)
A 		25
avr 2.3
(-2.5) 		4.4
(-0.8) 		7.6
(1.7) 		9.3
(3) 		1.6
(-3) 		3.1
(-1.8) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 0.6
(-2.6)
A 		0.3
(-3)
A 		0.3
(-3)
A 		5.1
(3)
A 		5
B 0.7
(3)
A 		0.5
(0.6)
A 		0.3
(-1.8)
A 		0.2
(-3)
A 		1
C 1.7
(-2.6)
A 		2.4
(-1)
A 		1.5
(-3)
A 		4.2
(3)
A 		3
avr 1
(-2.3) 		1.1
(-2) 		0.7
(-3) 		3.2
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 0.4
(-2.7)
A 		3
(1.3)
A 		4.1
(3)
A 		0.4
(-2.7)
A 		0.2
(-3)
A 		2
(-0.2)
A 		4
B 1.1
(1.5)
A 		0.9
(0.5)
A 		0.3
(-2.5)
A 		0.3
(-2.5)
A 		1.4
(3)
A 		0.2
(-3)
A 		1
C 0.5
(-2.8)
A 		0.7
(-2.5)
A 		0.7
(-2.5)
A 		5.1
(3)
A 		0.3
(-3)
A 		0.3
(-3)
A 		5
avr 0.7
(-2.5) 		1.5
(1.2) 		1.7
(2.1) 		1.9
(3) 		0.6
(-3) 		0.8
(-2.1) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178341_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1998
Sequence Type Exemplar sequence
Representative Public ID T05F1.7 NCBI
Target Description T05F1.7 /REP_DB=WormBase Gene ID /WP=CE13255 /TR=O18032 /GB=CAB04696.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060159(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060159 NCBI Caenorhabditis elegans T05F1.7 (T05F1.7) mRNA, complete cds. 11/11 None
GENEFINDER00000020958 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9647821:9649857:-1 11/11 None
T05F1.7 ENSEMBL cdna:known chromosome:CEL140:I:9647821:9650363:-1 gene:T05F1.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000020945 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9647751-9650294(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T05F1.7
Entrez Gene 188138 Entrez gene
SwissProt O18032 EMBL-EBI
WormBase CE13255 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04696 Hypothetical protein T05F1.7 [Caenorhabditis elegans] ref|NP_492560.1| T05F1.7 [Caenorhabditis elegans] 0.0
blast CAE60192 Hypothetical protein CBG03752 [Caenorhabditis briggsae] 1.0E-120
Sequence
Target Sequence 
>C. ELEGANS:178341_AT
cagttgaatctcgaagacgatcaaaatctaatgttcaaaatccgaaagaaaattggaaac
agttagaagatttgaaaaagcaaataattcaattaaaacgagaatctgaagctcttcata
tgaataaatcgaggctttttgaagagaaagaggctctacaaaaaactgctgacgagtgtc
aaagggaagcggatcgagctgctcagaacctgagaaatgctgaaaatattcgaatttcag
agttgaaccgacaagaacggaagcttcaaccaccaactctcgtagaatcaaaagatgaaa
aacgcgaaaaagaatatttggagaagaaagaaaaacttgcagagaaaatcaaacaaattg
aaaaatcaacagatgaacaaaagaccgaattggaaagaatacggaaacgctcagaatttc
tcaagagacaactgaaatcgtacagtgaattgaatttggtacaatttgaaaatgaaaaaa
ttgagaaaggaacagaaattcgaatgttaaaaaaacaatggcacgaacaaataatggctt
tgaatgttttgaata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGTTGAATCTCGAAGACGATCAAA 264 207 845 Antisense
GAATAAATCGAGGCTTTTTGAAGAG 568 325 966 Antisense
AAAACTGCTGACGAGTGTCAAAGGG 371 129 1006 Antisense
AAAGGGAAGCGGATCGAGCTGCTCA 15 123 1025 Antisense
GGATCGAGCTGCTCAGAACCTGAGA 157 513 1035 Antisense
CGAATTTCAGAGTTGAACCGACAAG 696 243 1075 Antisense
CAAGAACGGAAGCTTCAACCACCAA 49 185 1096 Antisense
TCAACCACCAACTCTCGTAGAATCA 451 629 1110 Antisense
ACGGAAACGCTCAGAATTTCTCAAG 290 95 1245 Antisense
CAATGGCACGAACAAATAATGGCTT 265 183 1360 Antisense
ATAATGGCTTTGAATGTTTTGAATA 121 25 1375 Antisense
Sequence Source Affymetrix Proprietary Database