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[178340_at]

Description K08H2.3 /REP_DB=WormBase Gene ID /WP=CE06161 /TR=Q21368 /GB=CAA94150.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 43      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 14.7
(0.8)
A 		21.3
(3)
A 		3.1
(-3)
A 		11.8
(-0.1)
A 		18
B 8.8
(-2.3)
A 		46
(3)
A 		3.5
(-3)
A 		3.8
(-3)
A 		43
C 15.6
(3)
A 		7.8
(-1.8)
A 		5.8
(-3)
A 		6.3
(-2.7)
A 		10
avr 13
(-0.4) 		25
(3) 		4.1
(-3) 		7.3
(-2.1) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 30.1
(-1.2)
A 		6.9
(-3)
A 		8.2
(-2.9)
A 		37.3
(-0.7)
A 		79.3
(2.5)
A 		86.4
(3)
A 		80
B 32.5
(-1.6)
A 		27.4
(-1.9)
A 		7.3
(-3)
A 		8.5
(-2.9)
A 		76.3
(0.8)
A 		117.7
(3)
P 		110
C 17.1
(-2.5)
A 		9.1
(-3)
A 		49.2
(-0.8)
A 		8.8
(-3)
A 		53.2
(-0.6)
A 		119.1
(3)
P 		110
avr 26.6
(-2.2) 		14.5
(-3) 		21.6
(-2.5) 		18.2
(-2.8) 		69.6
(0.5) 		107.7
(3) 		93
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 5.3
(3)
A 		4.6
(2.1)
A 		0.8
(-3)
A 		1.7
(-1.8)
A 		5
B 2.8
(-1.9)
A 		11.4
(3)
A 		0.8
(-3)
A 		0.8
(-3)
A 		11
C 5.1
(3)
A 		2.3
(-1.2)
A 		2
(-1.7)
A 		1.1
(-3)
A 		4
avr 4.4
(0.9) 		6.1
(3) 		1.2
(-3) 		1.2
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 5.5
(-2)
A 		2.5
(-2.8)
A 		1.8
(-3)
A 		9.5
(-0.9)
A 		23.9
(3)
A 		21
(2.2)
A 		22
B 11.3
(-1.6)
A 		9.1
(-2)
A 		1.8
(-3)
A 		2.3
(-2.9)
A 		31
(1.2)
A 		43.9
(3)
P 		42
C 6.3
(-2.3)
A 		2.8
(-2.8)
A 		12.5
(-1.3)
A 		1.8
(-3)
A 		17.2
(-0.6)
A 		39.9
(3)
P 		38
avr 7.7
(-2.4) 		4.8
(-2.9) 		5.4
(-2.8) 		4.5
(-3) 		24
(0.8) 		34.9
(3) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178340_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17649
Sequence Type Exemplar sequence
Representative Public ID K08H2.3 NCBI
Target Description K08H2.3 /REP_DB=WormBase Gene ID /WP=CE06161 /TR=Q21368 /GB=CAA94150.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077795(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077795 NCBI Caenorhabditis elegans K08H2.3 (K08H2.3) mRNA, complete cds. 11/11 None
SNAP00000000971 ENSEMBL cdna:SNAP chromosome:CEL140:X:13237339:13238284:1 11/11 None
GENEFINDER00000000981 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13237342:13238284:1 11/11 None
K08H2.3 ENSEMBL cdna:known chromosome:CEL140:X:13237342:13238284:1 gene:K08H2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13237341-13238284(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K08H2.3
Entrez Gene 181448 Entrez gene
SwissProt Q21368 EMBL-EBI
WormBase CE06161 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94150 Hypothetical protein K08H2.3 [Caenorhabditis elegans] ref|NP_510196.1| K08H2.3 [Caenorhabditis elegans] 1.0E-159
blast CAA94148 Hypothetical protein K08H2.2 [Caenorhabditis elegans] ref|NP_510195.1| K08H2.2 [Caenorhabditis elegans] 3.0E-18
blast CAA94151 Hypothetical protein K08H2.4 [Caenorhabditis elegans] ref|NP_510197.1| K08H2.4 [Caenorhabditis elegans] 7.0E-16
Sequence
Target Sequence 
>C. ELEGANS:178340_AT
gtgcggacaatacccttgggactttgataagctcgtttacgataaaatccgcaagaagtt
cttcgaaggagtgattcccattttctataaaattgcgcgttttgctgacatgcaacgcaa
tgatggaataccgatggaatatgaggaggaggaccctattggaacaggacttgaatattc
tgaaagagcggaaggcgaattcatcgagctctacaacacttggtttttccatgaagatgt
ggatggtcagcaaccaggaagagaagatttcgaccccgctgccgaacaggaaaactcgga
agatcctgaagttgttgaaccgaagagtgtcgatcgcaatctcgcgctgttcttgggcga
gatgtatctgacgatgcagcctcatacagacgtctacccaccggctccaaagcctggaga
cattgtgattccaattggaggtcttgccaagtgcgagtgctcaccgggttgcacaagaga
gcttccacagccagcgtaccgtatcatcgacgaagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCGGACAATACCCTTGGGACTTT 600 475 255 Antisense
AGGAGTGATTCCCATTTTCTATAAA 140 57 321 Antisense
AAATTGCGCGTTTTGCTGACATGCA 462 115 344 Antisense
GAATTCATCGAGCTCTACAACACTT 79 325 451 Antisense
GAAGAGTGTCGATCGCAATCTCGCG 69 339 576 Antisense
CAATCTCGCGCTGTTCTTGGGCGAG 677 181 591 Antisense
ACGATGCAGCCTCATACAGACGTCT 257 93 625 Antisense
GAGGTCTTGCCAAGTGCGAGTGCTC 709 401 692 Antisense
CGAGTGCTCACCGGGTTGCACAAGA 542 247 708 Antisense
GTTGCACAAGAGAGCTTCCACAGCC 534 439 722 Antisense
CAGCGTACCGTATCATCGACGAAGC 1 199 746 Antisense
Sequence Source Affymetrix Proprietary Database