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[178338_at]

Description C05G5.3 /REP_DB=WormBase Gene ID /WP=CE05226 /TR=Q17677 /GB=CAA94106.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 22      4grp_high_8_8 > 11      6grp_highest_nonorm > 80      6grp_total > 22      4grp_total > 21      6grp_highest_sub > 02      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 267
1 2 3 4 range
A 224
(0.5)
P 		170.5
(-0.7)
P 		68
(-3)
M 		334.9
(3)
P 		267
B 263.2
(1.5)
P 		168.1
(-1.7)
P 		130.5
(-3)
P 		307.5
(3)
P 		177
C 229.2
(1.7)
P 		148.4
(-2.9)
P 		145.8
(-3)
P 		252.2
(3)
P 		106
avr 238.8
(1.1) 		162.3
(-1.4) 		114.8
(-3) 		298.2
(3) 		183

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 209
1 2 3 4 5 6 range
A 269.6
(3)
P 		229.2
(1.7)
P 		239.5
(2)
P 		197.6
(0.6)
P 		117.3
(-2)
P 		87.4
(-3)
P 		182
B 231.9
(0.5)
P 		296.2
(3)
P 		267.3
(1.9)
P 		140.1
(-3)
P 		180.9
(-1.4)
P 		147.1
(-2.7)
P 		156
C 173.2
(-1)
P 		261.9
(3)
P 		196.5
(0.1)
P 		225.8
(1.4)
P 		128.3
(-3)
P 		149
(-2.1)
P 		134
avr 224.9
(1.3) 		262.4
(3) 		234.4
(1.8) 		187.8
(-0.3) 		142.2
(-2.4) 		127.8
(-3) 		135
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 81.6
(3)
P 		37
(-1.2)
P 		17.8
(-3)
M 		49
(-0.1)
P 		64
B 83.9
(3)
P 		41.5
(-1.7)
P 		30.2
(-3)
P 		65.5
(0.9)
P 		54
C 75.9
(3)
P 		42.7
(-3)
P 		50.8
(-1.5)
P 		42.5
(-3)
P 		33
avr 80.5
(3) 		40.4
(-2.1) 		32.9
(-3) 		52.3
(-0.6) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 49.7
(-0.2)
P 		81.5
(3)
P 		52.1
(0.1)
P 		50.1
(-0.1)
P 		35.4
(-1.6)
P 		21.3
(-3)
P 		60
B 80.7
(1.3)
P 		98.6
(3)
P 		64.9
(-0.3)
P 		37.1
(-3)
P 		73.5
(0.6)
P 		54.9
(-1.3)
P 		62
C 64.2
(0.5)
P 		79.9
(3)
P 		50
(-1.7)
P 		45.4
(-2.4)
P 		41.5
(-3)
P 		49.9
(-1.7)
P 		38
avr 64.9
(0.1) 		86.7
(3) 		55.7
(-1.2) 		44.2
(-2.7) 		50.1
(-1.9) 		42
(-3) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178338_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17639
Sequence Type Exemplar sequence
Representative Public ID C05G5.3 NCBI
Target Description C05G5.3 /REP_DB=WormBase Gene ID /WP=CE05226 /TR=Q17677 /GB=CAA94106.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078048
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C05G5.3 ENSEMBL cdna:known chromosome:CEL140:X:14750775:14751929:-1 gene:C05G5.3 None
NM_078048 NCBI Caenorhabditis elegans C05G5.3 (C05G5.3) mRNA, complete cds. None
SNAP00000001548 ENSEMBL cdna:SNAP chromosome:CEL140:X:14750937:14751920:-1 None
GENEFINDER00000001556 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14750937:14751920:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14750936-14752532(-) 99.87 99.87
Public Domain and Genome References
Gene Title
Ensembl C05G5.3
Entrez Gene 181569 Entrez gene
SwissProt Q17677 EMBL-EBI
WormBase CE30853 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94106 Hypothetical protein C05G5.3 [Caenorhabditis elegans] ref|NP_510449.2| C05G5.3 [Caenorhabditis elegans] 1.0E-104
blast CAE63224 Hypothetical protein CBG07584 [Caenorhabditis briggsae] 2.0E-54
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510449.2 1 10-32
C05G5.3 1 10-32
SNAP00000001548 1 10-32
GENEFINDER00000001556 1 10-32
Sequence
Target Sequence 
>C. ELEGANS:178338_AT
cttcttctttcccagcaatttattgatttgtggcggtggcaaacatcaagaaaaaatcgt
gtgatctttagcccagaagtttgcgaaaatgacccaccaaaggaaagggcttcaaactct
gaaaaggacaacagtgaggaaaaaactgagagtgaatcagaaactgatgagcaagatgaa
gatgaagaagaggagcagatgccacagtttaataaccgaaaaattacaaatactcagaac
ttttgtccagatgaaccgtcaacgtctcaggaaaatgtgagcacaacatttttcggccaa
agtctaaaattgtattttcagccttttgccaaagagctttccgatgctgacaagatgaat
gtaacaattggaaagctccacggaaagcttgccactgctcaattaaaggcgaaaacccgt
caaatcgccgcagaaatgagtaacgaggagaaagaatatgaagcaaaaatgaaaaacaac
caaatggaatcaatcatgagactgatgatgcaaaaccaggaaaagttcggcatgagcagt
gacgacatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCTTCTTTCCCAGCAATTTATTG 450 221 214 Antisense
AATCGTGTGATCTTTAGCCCAGAAG 498 169 268 Antisense
GAAGTTTGCGAAAATGACCCACCAA 518 335 289 Antisense
GGAGCAGATGCCACAGTTTAATAAC 161 519 405 Antisense
GAACTTTTGTCCAGATGAACCGTCA 332 349 450 Antisense
GAACCGTCAACGTCTCAGGAAAATG 641 345 466 Antisense
GTGAGCACAACATTTTTCGGCCAAA 249 483 490 Antisense
ATTGTATTTTCAGCCTTTTGCCAAA 498 3 522 Antisense
GCCAAAGAGCTTTCCGATGCTGACA 112 279 541 Antisense
GAAAGCTTGCCACTGCTCAATTAAA 229 359 596 Antisense
GTTCGGCATGAGCAGTGACGACATC 308 443 738 Antisense
Sequence Source Affymetrix Proprietary Database