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[178336_at]

Description M05B5.3 /REP_DB=WormBase Gene ID /WP=CE06189 /TR=Q21518 /GB=CAA95835.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 04      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 4.4
(-3)
A 		10.8
(1.2)
A 		5.2
(-2.5)
A 		13.6
(3)
A 		9
B 11.4
(-1.1)
A 		10.2
(-3)
A 		14
(3)
A 		10.6
(-2.4)
A 		4
C 42.7
(-0.6)
A 		7.2
(-2.7)
A 		2.7
(-3)
A 		101.8
(3)
A 		99
avr 19.5
(-0.9) 		9.4
(-2.6) 		7.3
(-3) 		42
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 38.3
(-0.7)
A 		9.8
(-3)
A 		22.1
(-2)
A 		12.2
(-2.8)
A 		44
(-0.2)
A 		82.6
(3)
A 		73
B 12.9
(-2.2)
A 		6.5
(-2.8)
A 		3.5
(-3)
A 		35.7
(-0.3)
A 		47
(0.6)
A 		76
(3)
A 		73
C 47.9
(1.5)
A 		31.1
(-0.5)
A 		10
(-3)
A 		11.8
(-2.8)
A 		61.1
(3)
A 		53
(2)
A 		51
avr 33
(-0.8) 		15.8
(-2.6) 		11.9
(-3) 		19.9
(-2.2) 		50.7
(1) 		70.5
(3) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 1.6
(-1.7)
A 		2.3
(3)
A 		1.4
(-3)
A 		2
(1)
A 		1
B 3.6
(3)
A 		2.5
(-2.1)
A 		3.3
(1.6)
A 		2.3
(-3)
A 		1
C 14.1
(1.9)
A 		2.1
(-2.6)
A 		0.9
(-3)
A 		17.2
(3)
A 		16
avr 6.4
(2.1) 		2.3
(-2.5) 		1.9
(-3) 		7.2
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 7.1
(-1.6)
A 		3.5
(-2.9)
A 		4.8
(-2.4)
A 		3.1
(-3)
A 		13.3
(0.6)
A 		20.1
(3)
A 		17
B 4.5
(-2.2)
A 		2.2
(-2.7)
A 		0.9
(-3)
A 		9.5
(-1.1)
A 		19.1
(1)
A 		28.3
(3)
A 		27
C 17.8
(2.3)
A 		9.5
(-0.6)
A 		2.6
(-2.9)
A 		2.4
(-3)
A 		19.8
(3)
A 		17.7
(2.3)
A 		17
avr 9.8
(-0.8) 		5.1
(-2.3) 		2.8
(-3) 		5
(-2.3) 		17.4
(1.6) 		22
(3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178336_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2182
Sequence Type Exemplar sequence
Representative Public ID M05B5.3 NCBI
Target Description M05B5.3 /REP_DB=WormBase Gene ID /WP=CE06189 /TR=Q21518 /GB=CAA95835.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059631(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059631 NCBI Caenorhabditis elegans M05B5.3 (M05B5.3) mRNA, complete cds. 11/11 None
SNAP00000017389 ENSEMBL cdna:SNAP chromosome:CEL140:I:7194716:7196290:1 11/11 None
GENEFINDER00000017399 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7194716:7196290:1 11/11 None
M05B5.3 ENSEMBL cdna:known chromosome:CEL140:I:7194758:7196389:1 gene:M05B5.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7194419-7196221(+) 97.41 100.0
Public Domain and Genome References
Gene Title
Ensembl M05B5.3
Entrez Gene 266840 Entrez gene
SwissProt Q21518 EMBL-EBI
WormBase CE28625 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA95835 Hypothetical protein M05B5.3 [Caenorhabditis elegans] ref|NP_492032.1| M05B5.3 [Caenorhabditis elegans] 1.0E-164
blast CAE74249 Hypothetical protein CBG21935 [Caenorhabditis briggsae] 3.0E-47
blast CAE74249 Hypothetical protein CBG21935 [Caenorhabditis briggsae] 5.0E-40
Sequence
Target Sequence 
>C. ELEGANS:178336_AT
gacaactccagaaacatcttccactactccgtcaactgtcacttcttctacttctgatcc
taacgcaccaaccgcttctgacgctgcttccggaactggaactggaactgaatcgtctga
tactcctgcttcatcggcaccacctacttctgcagcttccggcccaccggcaccaaagtc
taatgataaggattcgacgggagataagatctatgttaagagtgaatattgtggagcacc
gggagaaaaagtcactacaatctcttcaaacgtttctagtcaacaaccaaaatccaaggc
tccagctccacgtccatcaatttttccgtattttgttgaaccaaaagctccgagttccga
tgtttcaactagtaaagcatcttcaaagatgaccaatccggatcctggaaactctggatc
ttcttttgctctgtatcgcgaaaagcaaaagaagatggccactgattctgcaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAACTCCAGAAACATCTTCCACT 608 365 927 Antisense
AACTGAATCGTCTGATACTCCTGCT 692 141 1032 Antisense
CCCACCGGCACCAAAGTCTAATGAT 292 257 1089 Antisense
GAGTGAATATTGTGGAGCACCGGGA 305 401 1146 Antisense
AGAAAAAGTCACTACAATCTCTTCA 464 71 1170 Antisense
CTCCACGTCCATCAATTTTTCCGTA 332 235 1232 Antisense
GTTGAACCAAAAGCTCCGAGTTCCG 12 293 1261 Antisense
GCTCCGAGTTCCGATGTTTCAACTA 273 299 1273 Antisense
GACCAATCCGGATCCTGGAAACTCT 92 383 1317 Antisense
TCTTCTTTTGCTCTGTATCGCGAAA 704 615 1345 Antisense
GAAGATGGCCACTGATTCTGCAAAA 303 339 1377 Antisense
Sequence Source Affymetrix Proprietary Database