[Home] | [Total List]

[178335_at]

Description Y41E3.3 /REP_DB=WormBase Gene ID /WP=CE18371 /TR=O62433 /GB=CAB09000.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 31      6grp_high1_10_10 > 04      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_highest_nonorm > 70      6grp_total > 24      4grp_total > 22      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 422
1 2 3 4 range
A 336.9
(1.9)
P 		210.2
(-0.7)
P 		96
(-3)
P 		392.3
(3)
P 		296
B 348.2
(2.1)
P 		193.4
(-1.6)
P 		135.6
(-3)
P 		384.6
(3)
P 		249
C 518.4
(3)
P 		165.7
(-2.9)
P 		158.4
(-3)
P 		405.2
(1.1)
P 		360
avr 401.2
(3) 		189.8
(-1.7) 		130
(-3) 		394
(2.8) 		271

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 413
1 2 3 4 5 6 range
A 359.4
(2.2)
P 		398.1
(3)
P 		288.9
(0.8)
P 		175.9
(-1.6)
P 		181.4
(-1.4)
P 		105.8
(-3)
P 		292
B 519
(3)
P 		325.5
(0.1)
P 		285
(-0.6)
P 		239.8
(-1.2)
P 		145.8
(-2.7)
P 		124.6
(-3)
P 		394
C 395.9
(3)
P 		396.5
(3)
P 		270.6
(0.2)
P 		251.6
(-0.2)
P 		143.6
(-2.6)
P 		124.9
(-3)
P 		272
avr 424.8
(3) 		373.4
(2) 		281.5
(0.2) 		222.4
(-1) 		156.9
(-2.2) 		118.4
(-3) 		306
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 147
1 2 3 4 range
A 122.7
(3)
P 		45.6
(-1.7)
P 		25.1
(-3)
P 		57.4
(-1)
P 		98
B 111
(3)
P 		47.8
(-1.8)
P 		31.4
(-3)
P 		82
(0.8)
P 		80
C 171.6
(3)
P 		47.6
(-3)
P 		55.2
(-2.6)
P 		68.3
(-2)
P 		124
avr 135.1
(3) 		47
(-2.4) 		37.2
(-3) 		69.2
(-1) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 155
1 2 3 4 5 6 range
A 66.3
(-0.9)
P 		141.6
(3)
P 		62.9
(-1.1)
P 		44.6
(-2)
P 		54.7
(-1.5)
P 		25.8
(-3)
P 		116
B 180.6
(3)
P 		108.3
(-0.2)
P 		69.2
(-2)
P 		63.5
(-2.2)
P 		59.2
(-2.4)
P 		46.5
(-3)
P 		134
C 146.8
(3)
P 		121
(1.5)
P 		68.9
(-1.5)
P 		50.6
(-2.5)
P 		46.5
(-2.7)
P 		41.8
(-3)
P 		105
avr 131.2
(3) 		123.6
(2.5) 		67
(-1.1) 		52.9
(-2) 		53.5
(-2) 		38
(-3) 		93
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178335_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9054
Sequence Type Exemplar sequence
Representative Public ID Y41E3.3 NCBI
Target Description Y41E3.3 /REP_DB=WormBase Gene ID /WP=CE18371 /TR=O62433 /GB=CAB09000.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070408(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070408 NCBI Caenorhabditis elegans Y41E3.3 (Y41E3.3) mRNA, complete cds. 11/11 None
SNAP00000001435 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14987408:14996192:1 11/11 None
GENEFINDER00000001467 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14989477:15007097:1 11/11 None
Y41E3.3 ENSEMBL cdna:known chromosome:CEL140:IV:14981590:14996280:1 gene:Y41E3.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001437 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14990730-14996198(+) 98.52 100.0
Public Domain and Genome References
Gene Title
Ensembl Y41E3.3
Entrez Gene 189829 Entrez gene
SwissProt O62433 EMBL-EBI
WormBase CE32967 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6955 immune response inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3924 GTPase activity inferred from electronic annotation QuickGO AmiGO
5525 GTP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB09000 Hypothetical protein Y41E3.3 [Caenorhabditis elegans] ref|NP_502809.2| Y41E3.3 [Caenorhabditis elegans] 0.0
blast CAE68134 Hypothetical protein CBG13780 [Caenorhabditis briggsae] 0.0
blast CAE68134 Hypothetical protein CBG13780 [Caenorhabditis briggsae] 1.0E-172
blast AAU05551 Hypothetical protein Y54G2A.2b [Caenorhabditis elegans] ref|NP_001023493.1| Y54G2A.2b [Caenorhabditis elegans] 4.0E-91
Protein Domains
Database ID Description E-Value
Pfam IPR003191 EMBL-EBI Guanylate-binding protein 1.1E-95
Pfam IPR003191 EMBL-EBI Guanylate-binding protein 5.5E-28
Pfam IPR003191 EMBL-EBI Guanylate-binding protein 1.7E-33
Pfam IPR003191 EMBL-EBI Guanylate-binding protein 4.0E-88
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502809.2 2 458-480,485-507
Y41E3.3 2 458-480,485-507
SNAP00000001435 2 372-394,399-421
GENEFINDER00000001467 2 395-417,422-444
Sequence
Target Sequence 
>C. ELEGANS:178335_AT
atggtaccaaatctgctgggaccccatattctgaaaccaaaaatagtgaatggaaaaaca
gtaacatgccggaaaatgatacaatatttcaaagaatacgcagcctcattcgacggagaa
actcttccacaaccacaaagtattctcaatgcaaatgcaaaattaatatgtattgaagca
gcacatgaagctaaagtgaattatagtcgaggaatggatagatcaacgtatggaacacgt
atgatgtcagagaagaagcttcttgaagcacatattaaacatggaattactgcattaaac
atttttgataaatgtccaagaattggagcaaaagaagctgaacttgaaaagtacaaaaga
ctaaatgaagctaaacgagtaactggatgtgcttctgcaatgcttgcatgtggagattca
gtttttctgggaattgggctcggaagtgctgctagtggagccattgcaggagcagtgctg
acacttcaagctggtgtagttagtcttggaatcgtcgccatcccaatctcattgactact
ttattctttatttgggcctatgtatggactaaaccctgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGTACCAAATCTGCTGGGACCCC 187 51 484 Antisense
CTGGGACCCCATATTCTGAAACCAA 623 219 499 Antisense
TACGCAGCCTCATTCGACGGAGAAA 638 647 580 Antisense
CGACGGAGAAACTCTTCCACAACCA 527 251 594 Antisense
AACTGGATGTGCTTCTGCAATGCTT 317 143 864 Antisense
AATTGGGCTCGGAAGTGCTGCTAGT 173 179 915 Antisense
GGAGCAGTGCTGACACTTCAAGCTG 311 521 952 Antisense
GTGTAGTTAGTCTTGGAATCGTCGC 488 485 977 Antisense
CCATCCCAATCTCATTGACTACTTT 553 271 1001 Antisense
TACTTTATTCTTTATTTGGGCCTAT 164 641 1020 Antisense
GGCCTATGTATGGACTAAACCCTGC 563 543 1038 Antisense
Sequence Source Affymetrix Proprietary Database