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[178333_at]

Description K03H4.2 /REP_DB=WormBase Gene ID /WP=CE11698 /TR=Q9XVL5 /GB=CAB03162.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 0      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 207
1 2 3 4 range
A 132.9
(-1.8)
A 		113.3
(-3)
A 		208.7
(2.9)
A 		210
(3)
A 		97
B 111
(-2.7)
A 		106.8
(-3)
A 		180.7
(3)
P 		157.1
(1.1)
A 		74
C 134.4
(-2.8)
M 		127.8
(-3)
A 		172.5
(-1.6)
P 		313.8
(3)
P 		186
avr 126.1
(-2.5) 		116
(-3) 		187.3
(0.9) 		227
(3) 		111

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 357
1 2 3 4 5 6 range
A 159.7
(-2.3)
A 		125.7
(-3)
P 		156.5
(-2.4)
A 		176.4
(-2)
A 		278.2
(-0.1)
P 		436.8
(3)
P 		311
B 89
(-3)
A 		106.8
(-2.5)
P 		112
(-2.4)
A 		163.3
(-1)
P 		291
(2.5)
P 		310.2
(3)
P 		221
C 79.7
(-3)
A 		202.2
(-0.6)
P 		164
(-1.3)
A 		170.4
(-1.2)
A 		386
(3)
P 		290.7
(1.1)
P 		306
avr 109.5
(-3) 		144.9
(-2.1) 		144.2
(-2.1) 		170
(-1.5) 		318.4
(2.3) 		345.9
(3) 		236
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 48.4
(1.8)
A 		24.6
(-3)
A 		54.6
(3)
A 		30.7
(-1.8)
A 		30
B 35.4
(0.5)
A 		26.4
(-3)
A 		41.9
(3)
P 		33.5
(-0.3)
A 		16
C 44.5
(-1)
M 		36.8
(-3)
A 		60.1
(3)
P 		52.9
(1.1)
P 		23
avr 42.8
(0.5) 		29.3
(-3) 		52.2
(3) 		39
(-0.5) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 29.4
(-3)
A 		44.7
(-1.8)
P 		34.1
(-2.6)
A 		44.7
(-1.8)
A 		84
(1.3)
P 		106.4
(3)
P 		77
B 31
(-2.7)
A 		35.5
(-2.5)
P 		27.2
(-3)
A 		43.3
(-1.9)
P 		118.2
(3)
P 		115.7
(2.8)
P 		91
C 29.5
(-3)
A 		61.7
(-1)
P 		41.7
(-2.2)
A 		34.3
(-2.7)
A 		124.9
(3)
P 		97.3
(1.3)
P 		95
avr 30
(-3) 		47.3
(-1.7) 		34.3
(-2.7) 		40.8
(-2.2) 		109
(3) 		106.5
(2.8) 		79
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178333_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13049
Sequence Type Exemplar sequence
Representative Public ID K03H4.2 NCBI
Target Description K03H4.2 /REP_DB=WormBase Gene ID /WP=CE11698 /TR=Q9XVL5 /GB=CAB03162.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073873(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073873 NCBI Caenorhabditis elegans K03H4.2 (K03H4.2) mRNA, complete cds. 11/11 None
SNAP00000020389 ENSEMBL cdna:SNAP chromosome:CEL140:V:13155511:13156615:1 11/11 None
GENEFINDER00000020394 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13155511:13157064:1 11/11 None
K03H4.2 ENSEMBL cdna:known chromosome:CEL140:V:13155511:13156615:1 gene:K03H4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13155510-13156615(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K03H4.2
Entrez Gene 179799 Entrez gene
SwissProt Q9XVL5 EMBL-EBI
WormBase CE11698 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03162 Hypothetical protein K03H4.2 [Caenorhabditis elegans] ref|NP_506274.1| K03H4.2 [Caenorhabditis elegans] 1.0E-128
blast CAB03162 Hypothetical protein K03H4.2 [Caenorhabditis elegans] ref|NP_506274.1| K03H4.2 [Caenorhabditis elegans] 1.0E-119
blast CAE64658 Hypothetical protein CBG09430 [Caenorhabditis briggsae] 2.0E-60
blast CAE64658 Hypothetical protein CBG09430 [Caenorhabditis briggsae] 1.0E-59
Sequence
Target Sequence 
>C. ELEGANS:178333_AT
tgaagccgctgcatctcaaaatcgagctacaccgattgattttggtacacgagaagtgaa
agaagatgacgatgttctcagtgacactggtcgtcgtcgaagcgttaacttaataacgcc
ttctcctattccagaagaaaccgaggataacttaacagaaacgcctattcctgtagttga
acacattccaagaagtgcaatttttgaacctttcaatcacgaaaattctcctttgttctc
cgtgaaggcacgtaagaaagctcatgaataccgctccaacgattcaactctcagtccttc
atcatcttccaacaatgacgacagtatccggattgacagtatccgtgtccgttcatcaaa
atctgcaacgaataatcaactgaaaggacggcttacaccaatactaggagggtcccttcg
cccgattccaaaaaaaaggaaccgagtcgctttcaacggaaattctacatttgtcgcacc
ggagagactatgcttgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAGCCGCTGCATCTCAAAATCGA 70 575 240 Antisense
GATGACGATGTTCTCAGTGACACTG 5 413 304 Antisense
CACTGGTCGTCGTCGAAGCGTTAAC 5 199 324 Antisense
TTAACTTAATAACGCCTTCTCCTAT 499 681 344 Antisense
GAAACGCCTATTCCTGTAGTTGAAC 83 359 397 Antisense
CACGAAAATTCTCCTTTGTTCTCCG 579 199 457 Antisense
GAAAGCTCATGAATACCGCTCCAAC 611 359 495 Antisense
TATCCGTGTCCGTTCATCAAAATCT 199 657 579 Antisense
AGGACGGCTTACACCAATACTAGGA 603 47 624 Antisense
GGAAATTCTACATTTGTCGCACCGG 478 525 697 Antisense
GTCGCACCGGAGAGACTATGCTTGG 390 473 712 Antisense
Sequence Source Affymetrix Proprietary Database