[Home] | [Total List]

[178332_s_at]

Description K09E4.4 /REP_DB=WormBase Gene ID /WP=CE19997 /TR=Q9NAP6 /GB=CAB70170.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 36      4grp_highest_8_8 > 39      4grp_high_8_8 > 03      6grp_highest_nonorm > 72      6grp_total > 35      4grp_total > 13      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 960
1 2 3 4 range
A 659.2
(-0.2)
P 		352.6
(-2.5)
P 		282.5
(-3)
P 		1099.6
(3)
P 		817
B 611.7
(-0.6)
P 		325.3
(-2.5)
P 		247.4
(-3)
P 		1168.4
(3)
P 		921
C 645.3
(0.4)
P 		322.2
(-2.1)
P 		208.3
(-3)
P 		983.3
(3)
P 		775
avr 638.7
(-0.2) 		333.4
(-2.4) 		246.1
(-3) 		1083.8
(3) 		838

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 216
1 2 3 4 5 6 range
A 448
(3)
P 		395.8
(0.5)
P 		426.9
(2)
P 		377.3
(-0.3)
P 		321
(-3)
P 		419.9
(1.7)
P 		127
B 532.9
(2.8)
P 		536.9
(3)
P 		531.9
(2.8)
P 		453.3
(-1.1)
P 		413.5
(-3)
P 		496.6
(1)
P 		123
C 454.1
(1.3)
P 		493.9
(3)
P 		397.8
(-1)
P 		395.7
(-1.1)
P 		350.4
(-3)
P 		445.5
(1)
P 		144
avr 478.3
(3) 		475.5
(2.9) 		452.2
(1.7) 		408.8
(-0.6) 		361.6
(-3) 		454
(1.8) 		117
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 192
1 2 3 4 range
A 240
(3)
P 		76.5
(-2.9)
P 		73.9
(-3)
P 		161
(0.1)
P 		166
B 195.1
(1.3)
P 		80.3
(-2.3)
P 		57.3
(-3)
P 		249
(3)
P 		192
C 213.6
(3)
P 		92.6
(-2.1)
P 		72.6
(-3)
P 		165.8
(1)
P 		141
avr 216.2
(3) 		83.1
(-2.4) 		67.9
(-3) 		191.9
(2) 		148

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 82.6
(-3)
P 		140.8
(3)
P 		93
(-1.9)
P 		95.7
(-1.6)
P 		96.9
(-1.5)
P 		102.2
(-1)
P 		58
B 185.4
(3)
P 		178.7
(2.4)
P 		129.2
(-2.2)
P 		120.1
(-3)
P 		168
(1.4)
P 		185.2
(3)
P 		65
C 168.3
(3)
P 		150.7
(1.8)
P 		101.3
(-1.5)
P 		79.6
(-3)
P 		113.4
(-0.7)
P 		149.2
(1.7)
P 		89
avr 145.4
(1.8) 		156.7
(3) 		107.8
(-2) 		98.5
(-3) 		126.1
(-0.2) 		145.5
(1.8) 		58
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178332_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3878
Sequence Type Exemplar sequence
Representative Public ID K09E4.4 NCBI
Target Description K09E4.4 /REP_DB=WormBase Gene ID /WP=CE19997 /TR=Q9NAP6 /GB=CAB70170.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064547(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064547 NCBI Caenorhabditis elegans K09E4.4 (K09E4.4) mRNA, complete cds. 11/11 A 
SNAP00000022863 ENSEMBL cdna:SNAP chromosome:CEL140:II:14114190:14123808:-1 11/11 None
GENEFINDER00000022873 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14114190:14117996:-1 11/11 None
K09E4.4.2 ENSEMBL cdna:known chromosome:CEL140:II:14114141:14122056:-1 gene:K09E4.4 11/11 A 
K09E4.4.1 ENSEMBL cdna:known chromosome:CEL140:II:14114141:14118001:-1 gene:K09E4.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14114186-14117259(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K09E4.4
Entrez Gene 175063 Entrez gene
SwissProt Q9NAP6 EMBL-EBI
WormBase CE32692 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB70170 Hypothetical protein K09E4.4 [Caenorhabditis elegans] ref|NP_496948.2| K09E4.4 [Caenorhabditis elegans] 0.0
blast CAE73404 Hypothetical protein CBG20846 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007781 EMBL-EBI Alpha-N-acetylglucosaminidase 5.8E-124
Pfam IPR007781 EMBL-EBI Alpha-N-acetylglucosaminidase 1.3E-11
Pfam IPR007781 EMBL-EBI Alpha-N-acetylglucosaminidase 2.3E-105
Pfam IPR007781 EMBL-EBI Alpha-N-acetylglucosaminidase 1.3E-11
Pfam IPR007781 EMBL-EBI Alpha-N-acetylglucosaminidase 6.4E-119
Pfam IPR007781 EMBL-EBI Alpha-N-acetylglucosaminidase 1.3E-11
Sequence
Target Sequence 
>C. ELEGANS:178332_S_AT
gaatcgggatgttcggcagtggatagaaaatgcaaaatccatcgccccaacatcagaaga
acgtcaagtgttcccggtgaccgccggtgacatcctaacagtctggggtccgactggtca
aaatctggactatgctcatcgcgagtgggctgggcttatgtcgggctactacggacggcg
atggcaatacttttgtgattggattctcgagcatgatgatttcaaccacaccgaattttc
gatctcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCGGGATGTTCGGCAGTGGATA 228 327 1449 Antisense
CCATCGCCCCAACATCAGAAGAACG 580 271 1487 Antisense
GAAGAACGTCAAGTGTTCCCGGTGA 143 337 1504 Antisense
GTGACATCCTAACAGTCTGGGGTCC 599 479 1535 Antisense
GTCTGGGGTCCGACTGGTCAAAATC 496 433 1549 Antisense
AATCTGGACTATGCTCATCGCGAGT 590 169 1570 Antisense
TCGCGAGTGGGCTGGGCTTATGTCG 402 599 1587 Antisense
GCTTATGTCGGGCTACTACGGACGG 502 303 1602 Antisense
ACTACGGACGGCGATGGCAATACTT 688 97 1616 Antisense
GAGCATGATGATTTCAACCACACCG 410 389 1657 Antisense
AACCACACCGAATTTTCGATCTCAG 699 147 1672 Antisense
Sequence Source Affymetrix Proprietary Database