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[178329_at]

Description F14H3.7 /REP_DB=WormBase Gene ID /WP=CE19794 /TR=Q9XU99 /GB=CAB05491.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 50      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 26
(0.3)
A 		33.5
(3)
A 		16.7
(-3)
A 		26.7
(0.6)
A 		17
B 31.8
(3)
A 		9.2
(-1.9)
A 		14.4
(-0.8)
A 		4.3
(-3)
A 		28
C 9.5
(-3)
A 		33.6
(1.3)
A 		43.3
(3)
A 		35.9
(1.7)
A 		34
avr 22.4
(-2.8) 		25.4
(3) 		24.8
(1.8) 		22.3
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 9.4
(-1.4)
A 		22
(1.4)
A 		2.1
(-3)
A 		29.2
(3)
A 		27.7
(2.7)
A 		3.8
(-2.6)
A 		27
B 37.1
(3)
A 		18.4
(-0.2)
A 		23
(0.6)
A 		35.5
(2.7)
A 		32
(2.1)
A 		1.7
(-3)
A 		35
C 39.6
(1.7)
A 		38.5
(1.5)
A 		38.8
(1.6)
A 		46
(3)
A 		18.7
(-2.4)
A 		15.8
(-3)
A 		30
avr 28.7
(1.3) 		26.3
(0.9) 		21.3
(-0.1) 		36.9
(3) 		26.1
(0.8) 		7.1
(-3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 9.5
(3)
A 		7.3
(0.6)
A 		4.4
(-2.5)
A 		3.9
(-3)
A 		6
B 10.1
(3)
A 		2.3
(-2.1)
A 		3.3
(-1.4)
A 		0.9
(-3)
A 		9
C 3.1
(-3)
A 		9.7
(0.3)
A 		15.1
(3)
A 		6.1
(-1.5)
A 		12
avr 7.6
(3) 		6.4
(1.2) 		7.6
(3) 		3.6
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 1.7
(-2.1)
A 		7.8
(2.5)
A 		0.5
(-3)
A 		7.4
(2.2)
A 		8.4
(3)
A 		0.9
(-2.7)
A 		8
B 12.9
(3)
A 		6.1
(-0.3)
A 		5.6
(-0.6)
A 		9.4
(1.3)
A 		13
(3)
A 		0.6
(-3)
A 		12
C 14.7
(3)
A 		11.7
(1.1)
A 		9.9
(-0.1)
A 		9.2
(-0.5)
A 		6.1
(-2.5)
A 		5.3
(-3)
A 		9
avr 9.8
(3) 		8.5
(2) 		5.3
(-0.6) 		8.7
(2.1) 		9.2
(2.5) 		2.3
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178329_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14291
Sequence Type Exemplar sequence
Representative Public ID F14H3.7 NCBI
Target Description F14H3.7 /REP_DB=WormBase Gene ID /WP=CE19794 /TR=Q9XU99 /GB=CAB05491.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074640(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074640 NCBI Caenorhabditis elegans F14H3.7 (F14H3.7) mRNA, complete cds. 11/11 None
SNAP00000013824 ENSEMBL cdna:SNAP chromosome:CEL140:V:16062464:16065004:-1 10/11 None
GENEFINDER00000013841 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16061778:16064676:-1 10/11 None
F14H3.7 ENSEMBL cdna:known chromosome:CEL140:V:16062364:16064676:-1 gene:F14H3.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16062363-16064676(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F14H3.7
Entrez Gene 184492 Entrez gene
SwissProt Q9XU99 EMBL-EBI
WormBase CE19794 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
9401 phosphoenolpyruvate-dependent sugar phosphotransferase system inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5351 sugar porter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05491 Hypothetical protein F14H3.7 [Caenorhabditis elegans] ref|NP_507041.1| F14H3.7 [Caenorhabditis elegans] 0.0
blast CAB05491 Hypothetical protein F14H3.7 [Caenorhabditis elegans] ref|NP_507041.1| F14H3.7 [Caenorhabditis elegans] 1.0E-125
blast CAB07211 Hypothetical protein F47H4.4 [Caenorhabditis elegans] ref|NP_507388.1| F47H4.4 [Caenorhabditis elegans] 1.0E-18
blast NP_500678 Y9C9A.12 [Caenorhabditis elegans] gb|AAF60924.1| Hypothetical protein Y9C9A.12 [Caenorhabditis elegans] 6.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.2E-37
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.8E-9
Pfam IPR005098 EMBL-EBI Protein of unknown function DUF281 8.9E-36
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 4.8E-31
Pfam IPR005098 EMBL-EBI Protein of unknown function DUF281 8.9E-36
Sequence
Target Sequence 
>C. ELEGANS:178329_AT
cgcttagcttaccctagaaacctgcgtgatgtttttgatgttgtgcgaacggaacaatgg
aaacttgcgaaggaggttataattgatggtagatgtgattttaattcaataatcgatcat
cttgccaacttttcttttatcacaatggaattttcgtttcttacttttgaaaatgtattg
aagttgatgaacgttcttaatgattctgcaaattttaagtttggaactttctacggcacg
cttgtcaacaaggattcttttatggagattttcgagttgggatctaatttgaaaatcgat
tttacaaatgatgaatacttcaatattcaaagaaaaataattgaaacaataaatatatgc
gtggttgcttctgctatgtgcatcgcagagccgggaatgacgaacgacggctgcgaccgc
caaagaatctcatgccagggatcaatggcctgtgtaattatttcatatactgcgacgtta
gttggtggcggaacggcgccgactggcaacggcccgtctcgatttgctgagactacgttc
gattgccaaagtgatggggtctggcaggatttggatggta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCTTAGCTTACCCTAGAAACCTGC 601 253 685 Antisense
TCTTGCCAACTTTTCTTTTATCACA 471 617 804 Antisense
TTTCTACGGCACGCTTGTCAACAAG 587 671 912 Antisense
TGGTTGCTTCTGCTATGTGCATCGC 470 551 1046 Antisense
GTGCATCGCAGAGCCGGGAATGACG 3 481 1062 Antisense
GGGAATGACGAACGACGGCTGCGAC 231 493 1077 Antisense
TGCGACCGCCAAAGAATCTCATGCC 189 583 1096 Antisense
TACTGCGACGTTAGTTGGTGGCGGA 360 645 1152 Antisense
GGCCCGTCTCGATTTGCTGAGACTA 596 541 1195 Antisense
GCTGAGACTACGTTCGATTGCCAAA 274 295 1210 Antisense
GGGGTCTGGCAGGATTTGGATGGTA 206 499 1240 Antisense
Sequence Source Affymetrix Proprietary Database