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[178327_s_at]

Description R07E3.5 /REP_DB=WormBase Gene ID /WP=CE02299 /TR=Q21812 /GB=CAA89072.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 75      6grp_high1_10_10 > 56      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 85      6grp_total > 57      4grp_total > 04      6grp_highest_sub > Cu      6grp_cgc > 37      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 851
1 2 3 4 range
A 659.5
(-1.1)
P 		451.6
(-3)
P 		592
(-1.7)
P 		1103.1
(3)
P 		652
B 693.4
(-1.7)
P 		539.7
(-3)
P 		546.7
(-2.9)
P 		1241.3
(3)
P 		702
C 659
(-2)
P 		524.2
(-3)
P 		645.4
(-2.1)
P 		1302.7
(3)
P 		779
avr 670.6
(-1.6) 		505.2
(-3) 		594.7
(-2.2) 		1215.7
(3) 		711

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 951
1 2 3 4 5 6 range
A 924.4
(-0.4)
P 		791.3
(-1.3)
P 		705.7
(-1.9)
P 		733.7
(-1.7)
P 		546.8
(-3)
P 		1415.1
(3)
P 		868
B 842.1
(-0.8)
P 		815.6
(-1)
P 		807.1
(-1.1)
P 		697.6
(-1.8)
P 		522.1
(-3)
P 		1400.3
(3)
P 		878
C 856.6
(1.3)
P 		821
(1)
P 		743.5
(0.1)
P 		721.3
(-0.2)
P 		464.2
(-3)
P 		1005.6
(3)
P 		541
avr 874.4
(-0.1) 		809.3
(-0.7) 		752.1
(-1.1) 		717.5
(-1.4) 		511
(-3) 		1273.7
(3) 		763
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 167
1 2 3 4 range
A 240.1
(3)
P 		98
(-3)
P 		154.8
(-0.6)
P 		161.5
(-0.3)
P 		142
B 221.1
(1.1)
P 		133.3
(-2.7)
P 		126.7
(-3)
P 		264.5
(3)
P 		138
C 218.1
(2.5)
P 		150.7
(-3)
P 		224.9
(3)
P 		219.7
(2.6)
P 		74
avr 226.4
(3) 		127.3
(-3) 		168.8
(-0.5) 		215.2
(2.3) 		99

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 377
1 2 3 4 5 6 range
A 170.4
(-2.5)
P 		281.4
(1)
P 		153.7
(-3)
P 		186.1
(-2)
P 		165
(-2.6)
P 		344.5
(3)
P 		191
B 293
(-1.1)
P 		271.5
(-1.5)
P 		196
(-2.8)
P 		184.8
(-3)
P 		212.1
(-2.5)
P 		522.1
(3)
P 		337
C 317.5
(2.4)
P 		250.5
(0.3)
P 		189.2
(-1.6)
P 		145
(-3)
P 		150.2
(-2.8)
P 		336.6
(3)
P 		192
avr 260.3
(-0.7) 		267.8
(-0.5) 		179.6
(-2.8) 		172
(-3) 		175.8
(-2.9) 		401.1
(3) 		229
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178327_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16291
Sequence Type Exemplar sequence
Representative Public ID R07E3.5 NCBI
Target Description R07E3.5 /REP_DB=WormBase Gene ID /WP=CE02299 /TR=Q21812 /GB=CAA89072.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077331(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077331 NCBI Caenorhabditis elegans ACyLtransferase-like family member (acl-5) (acl-5) mRNA, complete cds. 11/11 None
SNAP00000043087 ENSEMBL cdna:SNAP chromosome:CEL140:X:10324239:10327383:-1 11/11 None
GENEFINDER00000043094 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10324239:10327383:-1 11/11 None
R07E3.5 ENSEMBL cdna:known chromosome:CEL140:X:10324111:10327384:-1 gene:R07E3.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10324238-10327383(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol acl-5
Ensembl R07E3.5
Entrez Gene 181241 Entrez gene
SwissProt Q21812 EMBL-EBI
WormBase CE02299 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1591888_AT similar to CG3209-PB, isoform B cfa
CANINE_2:CFA.21318.1.S1_S_AT similar to CG3209-PB, isoform B cfa
CANINE_2:CFA.21318.2.S1_AT similar to CG3209-PB, isoform B cfa
CHICKEN:GGA.16404.1.S1_S_AT similar to hypothetical protein 4933408F15 gga
HG-U133B:224480_S_AT hypothetical protein MGC11324 hs
HG-U133_PLUS_2:224480_S_AT hypothetical protein MGC11324 hs
HU35KSUBD:RC_AA449236_AT hypothetical protein MGC11324 hs
U133_X3P:G13623272_3P_S_AT hypothetical protein MGC11324 hs
HG-U95B:52883_AT hypothetical protein MGC11324 hs
U133_X3P:HS2.374681.1.S1_3P_AT Hypothetical protein MGC11324 hs
HG-U133_PLUS_2:1555000_AT Hypothetical protein MGC11324 hs
MG-U74BV2:114770_AT hypothetical protein 4933408F15 mm
MOE430B:1454799_AT hypothetical protein 4933408F15 mm
MOUSE430_2:1454799_AT hypothetical protein 4933408F15 mm
MU19KSUBC:TC41886_AT Hypothetical protein 4933408F15, mRNA (cDNA clone MGC:107456 IMAGE:30101305) mm
RAE230A:1374610_AT Similar to hypothetical protein 4933408F15 rn
RAT230_2:1374610_AT Similar to hypothetical protein 4933408F15 rn
RG-U34C:RC_AI237646_AT Similar to hypothetical protein 4933408F15 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8415 acyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA89072 Hypothetical protein R07E3.5 [Caenorhabditis elegans] ref|NP_509732.1| ACyLtransferase-like family member (acl-5) [Caenorhabditis elegans] 0.0
blast CAE70562 Hypothetical protein CBG17209 [Caenorhabditis briggsae] 0.0
blast AAF39831 Acyltransferase-like protein 4, isoform a [Caenorhabditis elegans] ref|NP_508379.1| ACyLtransferase-like family member (acl-4) [Caenorhabditis elegans] 1.0E-126
Protein Domains
Database ID Description E-Value
Pfam IPR002123 EMBL-EBI Phospholipid/glycerol acyltransferase 1.5E-38
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509732.1 3 4-25,149-171,176-198
R07E3.5 3 4-25,149-171,176-198
SNAP00000043087 3 4-25,149-171,176-198
GENEFINDER00000043094 3 4-25,149-171,176-198
Sequence
Target Sequence 
>C. ELEGANS:178327_S_AT
caagctcccaatcattatctttcccgaaggaacttgtatcaataacacatccgtaatgat
gttcaagaaaggatcattcgaaattggatcaacaatttatcccatcgcagttaagtacga
tactcgacttactgatgctttctggaacagcagtgcccagtcgtatggtagatatctgtg
gagtatgatgacatcatgggcaattatctgcgacgtatggtacttaccagcaatgaccag
aggtgaaaacgaagattctatctcgtttgcaaaaagagtgaaaagagcgattgcgaagaa
aggaggcctaatcgacttggaatgggatggagcattgaagagagaaagggtgtcgagtaa
gcttgtgacactccagcaaaaactgtattttgaacgattagctcggacaactactctgaa
cgccatgttggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGCTCCCAATCATTATCTTTCCC 521 185 939 Antisense
GATCAACAATTTATCCCATCGCAGT 495 421 1025 Antisense
GATACTCGACTTACTGATGCTTTCT 672 423 1057 Antisense
GATGCTTTCTGGAACAGCAGTGCCC 641 413 1072 Antisense
AGCAGTGCCCAGTCGTATGGTAGAT 321 75 1087 Antisense
GACATCATGGGCAATTATCTGCGAC 44 371 1128 Antisense
TATCTGCGACGTATGGTACTTACCA 163 655 1143 Antisense
GAGGCCTAATCGACTTGGAATGGGA 157 405 1241 Antisense
GTAAGCTTGTGACACTCCAGCAAAA 138 463 1295 Antisense
ACGATTAGCTCGGACAACTACTCTG 138 93 1332 Antisense
AACTACTCTGAACGCCATGTTGGAA 114 141 1347 Antisense
Sequence Source Affymetrix Proprietary Database