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[178326_at]

Description Y60A9.1 /REP_DB=WormBase Gene ID /WP=CE24534 /TR=Q9U1Y4 /GB=CAB60408.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 20      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 76.6
(1.8)
A 		71.4
(1.4)
A 		6.6
(-3)
A 		94.3
(3)
A 		88
B 43.6
(3)
A 		31.6
(1.2)
A 		4.2
(-3)
A 		30.5
(1)
A 		39
C 19.8
(-2.1)
A 		8.6
(-3)
A 		16
(-2.4)
A 		84.4
(3)
A 		76
avr 46.7
(0.7) 		37.2
(-0.2) 		8.9
(-3) 		69.7
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 88.4
(3)
M 		15.9
(-2.2)
A 		29.5
(-1.2)
A 		21.7
(-1.8)
A 		58
(0.8)
A 		4.6
(-3)
A 		84
B 46.9
(3)
A 		32.6
(0.9)
A 		40.2
(2)
A 		46.2
(2.9)
A 		47
(3)
A 		4.9
(-3)
A 		42
C 16.7
(-1.8)
A 		37.6
(0.5)
A 		53.6
(2.2)
A 		60.6
(3)
A 		6.1
(-3)
A 		6
(-3)
A 		55
avr 50.7
(3) 		28.7
(0.1) 		41.1
(1.7) 		42.8
(2) 		37
(1.2) 		5.2
(-3) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 27.9
(3)
A 		15.5
(0.2)
A 		1.7
(-3)
A 		13.8
(-0.2)
A 		26
B 13.9
(3)
A 		7.8
(0.2)
A 		1
(-3)
A 		6.5
(-0.4)
A 		13
C 6.6
(-0.9)
A 		2.5
(-3)
A 		5.6
(-1.4)
A 		14.2
(3)
A 		12
avr 16.1
(3) 		8.6
(-0.4) 		2.8
(-3) 		11.5
(0.9) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 16.3
(2.6)
M 		5.6
(-1.4)
A 		6.4
(-1.1)
A 		5.5
(-1.4)
A 		17.5
(3)
A 		1.1
(-3)
A 		16
B 16.3
(2)
A 		10.8
(0.1)
A 		9.8
(-0.2)
A 		12.2
(0.6)
A 		19.1
(3)
A 		1.8
(-3)
A 		17
C 6.2
(-0.8)
A 		11.5
(1.9)
A 		13.7
(3)
A 		12.2
(2.2)
A 		2
(-3)
A 		2
(-3)
A 		12
avr 12.9
(3) 		9.3
(1.1) 		10
(1.5) 		10
(1.5) 		12.9
(3) 		1.6
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178326_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17724
Sequence Type Exemplar sequence
Representative Public ID Y60A9.1 NCBI
Target Description Y60A9.1 /REP_DB=WormBase Gene ID /WP=CE24534 /TR=Q9U1Y4 /GB=CAB60408.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077997(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077997 NCBI Caenorhabditis elegans Y60A9.1 (Y60A9.1) mRNA, complete cds. 11/11 None
GENEFINDER00000029947 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14392786:14394253:-1 11/11 None
Y60A9.1 ENSEMBL cdna:known chromosome:CEL140:X:14392786:14394534:-1 gene:Y60A9.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000029945 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14392785-14394534(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y60A9.1
Entrez Gene 190439 Entrez gene
SwissProt Q9U1Y4 EMBL-EBI
WormBase CE24534 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60408 Hypothetical protein Y60A9.1 [Caenorhabditis elegans] ref|NP_510398.1| Y60A9.1 [Caenorhabditis elegans] 1.0E-120
blast CAB60408 Hypothetical protein Y60A9.1 [Caenorhabditis elegans] ref|NP_510398.1| Y60A9.1 [Caenorhabditis elegans] 1.0E-108
blast CAE65618 Hypothetical protein CBG10655 [Caenorhabditis briggsae] 3.0E-61
blast CAE65618 Hypothetical protein CBG10655 [Caenorhabditis briggsae] 1.0E-60
Sequence
Target Sequence 
>C. ELEGANS:178326_AT
acaagaacatctcgtctaccgatccgaccttctagttcacgaagaataagttggagccga
gaagcagatcgtgtccgcgagatatctccccggagtgagccggagccaataagaagatat
gatcctccgtatttacaaaaatcacaaagcttctcagacgattggcctgaaaaaacatac
cctatcgctgaaaaaaagtcaaagaaaaagaaaaagactccaatgataaaaccaaagtct
gttaaaacatcacatcaggaaccagttctggagccggtattcgtaccaattaaaccaaaa
aaatcagctgtgccaatcaaatcaaaggttgtaaaaccaaaagagcagataataagacaa
caaagggaacaacgctatcgagctcaaaaaacggagcaaatggaaagaacgcagcatgca
aactccaatttgaggaaagtgaagtctgagagcaacttgaagaaattaccaaatgacaca
ttgatgaggaaagcagatgccggaaaaacaaagcattttaatcctcctcgttggcgtcat
gttggtgatcgcaatcgacgtcgtcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAAGAACATCTCGTCTACCGATCC 698 111 208 Antisense
CGATCCGACCTTCTAGTTCACGAAG 19 245 227 Antisense
GCCGAGAAGCAGATCGTGTCCGCGA 450 283 263 Antisense
ATATCTCCCCGGAGTGAGCCGGAGC 142 21 289 Antisense
GAAGATATGATCCTCCGTATTTACA 84 339 320 Antisense
ACAAAGCTTCTCAGACGATTGGCCT 459 111 351 Antisense
GAACCAGTTCTGGAGCCGGTATTCG 101 345 466 Antisense
GAACGCAGCATGCAAACTCCAATTT 287 347 614 Antisense
ACAAAGCATTTTAATCCTCCTCGTT 370 111 715 Antisense
TCCTCGTTGGCGTCATGTTGGTGAT 76 593 732 Antisense
TGGTGATCGCAATCGACGTCGTCAA 389 553 750 Antisense
Sequence Source Affymetrix Proprietary Database