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[178324_at]

Description T19H5.2 /REP_DB=WormBase Gene ID /WP=CE01673 /TR=Q22596 /GB=CAA87663.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 10      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 1.7
(-3)
A 		2.6
(-2.8)
A 		3.7
(-2.5)
A 		24.1
(3)
A 		22
B 4.6
(3)
A 		3.5
(0.3)
A 		2.2
(-3)
A 		4.3
(2.3)
A 		2
C 3.5
(-2.8)
A 		13.8
(-1.9)
A 		1.2
(-3)
A 		72.1
(3)
A 		71
avr 3.3
(-2.8) 		6.6
(-2.2) 		2.4
(-3) 		33.5
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 10.8
(-0.3)
A 		5.1
(-2)
A 		7.2
(-1.4)
A 		1.6
(-3)
A 		22.3
(3)
A 		20.6
(2.5)
A 		21
B 0.9
(-3)
A 		5.3
(-1.6)
A 		19.4
(3)
A 		6.7
(-1.1)
A 		2.6
(-2.4)
A 		12.1
(0.6)
A 		19
C 5.6
(-1.5)
A 		16.5
(3)
A 		2.1
(-3)
A 		5.1
(-1.8)
A 		4.7
(-1.9)
A 		2.7
(-2.8)
A 		14
avr 5.8
(-1.9) 		9
(0.7) 		9.6
(1.2) 		4.5
(-3) 		9.9
(1.4) 		11.8
(3) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 0.6
(-3)
A 		0.6
(-3)
A 		1
(-2.2)
A 		3.5
(3)
A 		3
B 1.5
(3)
A 		0.9
(-0.6)
A 		0.5
(-3)
A 		0.9
(-0.6)
A 		1
C 1.2
(-2.6)
A 		4
(-1.2)
A 		0.4
(-3)
A 		12.2
(3)
A 		12
avr 1.1
(-2.4) 		1.8
(-1.5) 		0.6
(-3) 		5.5
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 2
(-1.5)
A 		1.8
(-1.7)
A 		1.6
(-1.9)
A 		0.4
(-3)
A 		6.7
(3)
A 		5
(1.4)
A 		6
B 0.3
(-3)
A 		1.8
(-1)
A 		4.7
(3)
A 		1.8
(-1)
A 		1.1
(-1.9)
A 		4.5
(2.7)
A 		4
C 2.1
(-0.9)
A 		5
(3)
A 		0.5
(-3)
A 		1
(-2.3)
A 		1.5
(-1.7)
A 		0.9
(-2.5)
A 		5
avr 1.5
(-2) 		2.9
(1.5) 		2.3
(-0) 		1.1
(-3) 		3.1
(2) 		3.5
(3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178324_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3216
Sequence Type Exemplar sequence
Representative Public ID T19H5.2 NCBI
Target Description T19H5.2 /REP_DB=WormBase Gene ID /WP=CE01673 /TR=Q22596 /GB=CAA87663.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063633(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063633 NCBI Caenorhabditis elegans T19H5.2 (T19H5.2) mRNA, complete cds. 11/11 None
SNAP00000023255 ENSEMBL cdna:SNAP chromosome:CEL140:II:9475620:9476204:1 10/11 None
T19H5.2 ENSEMBL cdna:known chromosome:CEL140:II:9474964:9476204:1 gene:T19H5.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9474960-9476201(+) 97.68 100.0
Public Domain and Genome References
Gene Title
Ensembl T19H5.2
Entrez Gene 188615 Entrez gene
SwissProt Q22596 EMBL-EBI
WormBase CE01673 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA87663 Hypothetical protein T19H5.2 [Caenorhabditis elegans] ref|NP_496034.1| T19H5.2 [Caenorhabditis elegans] 0.0
blast CAA87663 Hypothetical protein T19H5.2 [Caenorhabditis elegans] ref|NP_496034.1| T19H5.2 [Caenorhabditis elegans] 1.0E-111
blast CAA93862 Hypothetical protein R09D1.2 [Caenorhabditis elegans] ref|NP_496020.1| R09D1.2 [Caenorhabditis elegans] 1.0E-29
blast CAA93861 Hypothetical protein R09D1.1 [Caenorhabditis elegans] ref|NP_496021.1| R09D1.1 [Caenorhabditis elegans] 2.0E-27
blast CAA93862 Hypothetical protein R09D1.2 [Caenorhabditis elegans] ref|NP_496020.1| R09D1.2 [Caenorhabditis elegans] 3.0E-18
blast CAA93861 Hypothetical protein R09D1.1 [Caenorhabditis elegans] ref|NP_496021.1| R09D1.1 [Caenorhabditis elegans] 8.0E-14
Protein Domains
Database ID Description E-Value
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 7.6E-36
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 1.1E-21
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496034.1 1 41-59
T19H5.2 1 41-59
Sequence
Target Sequence 
>C. ELEGANS:178324_AT
cataatgtcaataatccggtttcttaaagacaatgaacttgatggagttgaattgctgtg
gaatagaaacactgaggaaaccctttattgcgaattattacaacatttgaaaatgggcct
tgaaaaacaagaaaagcaatattcaatatccctacgagtcccccaaactggaattggaaa
atggcacatagggtgtgagctagaagatcaagaaaatgccgattctattaacttgatctc
aatggctgaatatgaaaatcagttatttggatcaggcggtgtcatacgcataagtgaagc
ttttaatactgcgtgggaaatgaaataccatgcttgtaactccaatcagtcaagtaaatt
taatctcgtcattcccacaattgagcaaacggagcagattgatatgcaatatgtatggaa
ccccgagaaaaaagaaattcaaagatttaacagttctacaaaaaccgaatacacaaaact
acaaatgggaggagtatcgatatggtcacgtgacatggattatcataataatatccagct
agactcgtatttctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATAATGTCAATAATCCGGTTTCTT 482 213 501 Antisense
GAGGAAACCCTTTATTGCGAATTAT 543 401 574 Antisense
AATATTCAATATCCCTACGAGTCCC 403 173 638 Antisense
CTACGAGTCCCCCAAACTGGAATTG 589 225 652 Antisense
ATGCCGATTCTATTAACTTGATCTC 652 41 716 Antisense
GGATCAGGCGGTGTCATACGCATAA 596 509 769 Antisense
GTGAAGCTTTTAATACTGCGTGGGA 55 481 794 Antisense
ACCATGCTTGTAACTCCAATCAGTC 199 87 827 Antisense
AAATTTAATCTCGTCATTCCCACAA 552 115 856 Antisense
GGAGTATCGATATGGTCACGTGACA 426 517 991 Antisense
ATATCCAGCTAGACTCGTATTTCTT 152 21 1031 Antisense
Sequence Source Affymetrix Proprietary Database