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[178323_s_at]

Description R08B4.3 /REP_DB=WormBase Gene ID /WP=CE20025 /TR=Q9XVW5 /GB=CAA92002.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 07      6grp_high1_10_10 > 70      4grp_highest_8_8 > 11      4grp_high_8_8 > 47      6grp_highest_nonorm > 80      6grp_total > 40      4grp_total > 48      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 98.8
(-3)
P 		177.7
(2)
P 		193.6
(3)
P 		185.4
(2.5)
P 		95
B 121.2
(-1.3)
P 		156
(0.3)
P 		213.7
(3)
P 		86.1
(-3)
P 		128
C 142.8
(-3)
P 		210.6
(2.5)
P 		217.4
(3)
P 		176.2
(-0.3)
P 		75
avr 120.9
(-3) 		181.4
(1.2) 		208.2
(3) 		149.2
(-1.1) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 204
1 2 3 4 5 6 range
A 227.4
(2.2)
P 		228.1
(2.3)
P 		244.6
(3)
P 		214.4
(1.6)
P 		192.6
(0.7)
P 		111.7
(-3)
P 		133
B 174.5
(-2.1)
P 		256.6
(3)
P 		248.9
(2.5)
P 		232.1
(1.5)
P 		204.6
(-0.3)
P 		160.6
(-3)
P 		96
C 249.7
(1.1)
P 		212.2
(0)
P 		110
(-3)
P 		314.4
(3)
P 		159.3
(-1.6)
P 		170.7
(-1.2)
P 		204
avr 217.2
(0.9) 		232.3
(1.8) 		201.2
(0) 		253.6
(3) 		185.5
(-0.9) 		147.7
(-3) 		106
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 36
(-0.7)
P 		38.6
(-0.1)
P 		50.6
(3)
P 		27.1
(-3)
P 		24
B 38.7
(0.9)
P 		38.5
(0.9)
P 		49.5
(3)
P 		18.4
(-3)
P 		31
C 47.3
(-0.7)
P 		60.6
(1)
P 		75.8
(3)
P 		29.7
(-3)
P 		46
avr 40.7
(-0.2) 		45.9
(0.7) 		58.6
(3) 		25.1
(-3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 41.9
(-1.4)
P 		81.1
(3)
P 		53.3
(-0.1)
P 		54.4
(0)
P 		58.1
(0.4)
P 		27.2
(-3)
P 		54
B 60.7
(-2.8)
P 		85.4
(3)
P 		60.4
(-2.9)
P 		61.5
(-2.6)
P 		83.1
(2.5)
P 		59.9
(-3)
P 		26
C 92.5
(3)
P 		64.7
(0.4)
P 		28
(-3)
P 		63.2
(0.3)
P 		51.5
(-0.8)
P 		57.2
(-0.3)
P 		65
avr 65
(0.6) 		77.1
(3) 		47.2
(-3) 		59.7
(-0.5) 		64.2
(0.4) 		48.1
(-2.8) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178323_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16522
Sequence Type Exemplar sequence
Representative Public ID R08B4.3 NCBI
Target Description R08B4.3 /REP_DB=WormBase Gene ID /WP=CE20025 /TR=Q9XVW5 /GB=CAA92002.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077458(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077458 NCBI Caenorhabditis elegans R08B4.3 (R08B4.3) mRNA, complete cds. 11/11 None
GENEFINDER00000019870 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11119107:11120927:-1 11/11 None
R08B4.3 ENSEMBL cdna:known chromosome:CEL140:X:11118913:11120921:-1 gene:R08B4.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11119106-11120842(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R08B4.3
Entrez Gene 181301 Entrez gene
SwissProt Q9XVW5 EMBL-EBI
WormBase CE20025 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92002 Hypothetical protein R08B4.3 [Caenorhabditis elegans] ref|NP_509859.1| R08B4.3 [Caenorhabditis elegans] 9.0E-89
blast CAA92002 Hypothetical protein R08B4.3 [Caenorhabditis elegans] ref|NP_509859.1| R08B4.3 [Caenorhabditis elegans] 1.0E-81
blast CAE70699 Hypothetical protein CBG17431 [Caenorhabditis briggsae] 2.0E-58
blast CAE70699 Hypothetical protein CBG17431 [Caenorhabditis briggsae] 5.0E-56
blast XP_686695 PREDICTED: similar to ATP-dependent protease La (LON) domain-containing protein [Danio rerio] 2.0E-15
blast XP_686695 PREDICTED: similar to ATP-dependent protease La (LON) domain-containing protein [Danio rerio] 4.0E-15
Sequence
Target Sequence 
>C. ELEGANS:178323_S_AT
tacacgtcacgttggagaattattgtgcagacaatgtggagcatcgataacaaggcaatc
ggaattaataaatataactggggttgaccagtcacagctgcagtatgaatatgatttccc
attagcaggaaaaacgaccaaagtgaatgtgctcacaaatcctgaaaatcaaaaatttca
cgtgtttggcgccaaaactgctcatctgcattttcacggaaccccccaatctcacgcaac
gtggtatcctggctacaaatggacgatttgtctttgcaaatcttgcagtcgtcatatggg
atggtatttcgagccagaaaagagcacagccgtgtcggagaagaaaagctttgttggatt
ggttctcgacaatgtcatttcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACACGTCACGTTGGAGAATTATTG 458 639 54 Antisense
GTTGACCAGTCACAGCTGCAGTATG 195 437 136 Antisense
ATGAATATGATTTCCCATTAGCAGG 79 43 158 Antisense
AGTGAATGTGCTCACAAATCCTGAA 311 59 195 Antisense
GTGTTTGGCGCCAAAACTGCTCATC 6 487 235 Antisense
ACTGCTCATCTGCATTTTCACGGAA 198 99 250 Antisense
ATCTCACGCAACGTGGTATCCTGGC 546 31 282 Antisense
GCAAATCTTGCAGTCGTCATATGGG 366 317 329 Antisense
GTCATATGGGATGGTATTTCGAGCC 434 465 344 Antisense
AAGCTTTGTTGGATTGGTTCTCGAC 95 135 399 Antisense
TTGGTTCTCGACAATGTCATTTCAG 549 705 412 Antisense
Sequence Source Affymetrix Proprietary Database