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[178321_at]

Description M01E5.3 /REP_DB=WormBase Gene ID /WP=CE16272 /TR=O45692 /GB=CAB07641.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 13      6grp_total > 18      4grp_total > 03      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 379
1 2 3 4 range
A 162.9
(-1.9)
P 		161.9
(-2)
P 		96.3
(-3)
A 		473.1
(3)
P 		377
B 153.1
(-1.6)
P 		93.9
(-3)
A 		158.6
(-1.5)
P 		356.8
(3)
P 		263
C 224.7
(0.1)
P 		208.8
(-0.4)
P 		120
(-3)
P 		323.8
(3)
P 		204
avr 180.2
(-1.7) 		154.9
(-2.3) 		125
(-3) 		384.6
(3) 		260

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 218
1 2 3 4 5 6 range
A 116.8
(-1.1)
A 		160.5
(2.1)
P 		111
(-1.5)
A 		106.2
(-1.9)
A 		91.3
(-3)
A 		172.4
(3)
P 		81
B 178.1
(3)
A 		108.8
(-2.9)
A 		130.6
(-1)
A 		129.9
(-1.1)
A 		107.3
(-3)
A 		117.8
(-2.1)
P 		71
C 309.3
(3)
P 		118.4
(-2.6)
A 		154.8
(-1.5)
P 		108.3
(-2.9)
A 		190.7
(-0.5)
P 		105.5
(-3)
P 		204
avr 201.4
(3) 		129.2
(-2) 		132.1
(-1.8) 		114.8
(-3) 		129.8
(-2) 		131.9
(-1.8) 		87
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 59.3
(1.7)
P 		35.1
(-1.7)
P 		25.2
(-3)
A 		69.2
(3)
P 		44
B 48.8
(-0.1)
P 		23.2
(-3)
A 		36.7
(-1.5)
P 		76
(3)
P 		53
C 74.4
(3)
P 		60
(0.3)
P 		41.8
(-3)
P 		54.6
(-0.6)
P 		33
avr 60.8
(1.9) 		39.4
(-2.1) 		34.6
(-3) 		66.6
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 21.5
(-3)
A 		57.1
(3)
P 		24.2
(-2.5)
A 		26.9
(-2.1)
A 		27.5
(-2)
A 		42
(0.5)
P 		36
B 62
(3)
A 		36.2
(-2.1)
A 		31.7
(-3)
A 		34.4
(-2.5)
A 		43.6
(-0.6)
A 		43.9
(-0.6)
P 		30
C 114.6
(3)
P 		36.1
(-2.1)
A 		39.4
(-1.9)
P 		21.8
(-3)
A 		61.7
(-0.4)
P 		35.3
(-2.1)
P 		93
avr 66
(3) 		43.1
(-0.6) 		31.8
(-2.4) 		27.7
(-3) 		44.3
(-0.4) 		40.4
(-1) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178321_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.997
Sequence Type Exemplar sequence
Representative Public ID M01E5.3 NCBI
Target Description M01E5.3 /REP_DB=WormBase Gene ID /WP=CE16272 /TR=O45692 /GB=CAB07641.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060934(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060934 NCBI Caenorhabditis elegans M01E5.3 (M01E5.3) mRNA, complete cds. 11/11 None
SNAP00000016099 ENSEMBL cdna:SNAP chromosome:CEL140:I:13289788:13297659:-1 11/11 None
GENEFINDER00000016135 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13289788:13294798:-1 10/11 None
M01E5.3.2 ENSEMBL cdna:known chromosome:CEL140:I:13289014:13294618:-1 gene:M01E5.3 11/11 None
M01E5.3.1 ENSEMBL cdna:known chromosome:CEL140:I:13289014:13294616:-1 gene:M01E5.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13289718-13294389(-) 97.79 100.0
Public Domain and Genome References
Gene Title
Ensembl M01E5.3
Entrez Gene 173193 Entrez gene
SwissProt O45692 EMBL-EBI
WormBase CE16272 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07641 Hypothetical protein M01E5.3 [Caenorhabditis elegans] ref|NP_493335.1| M01E5.3 [Caenorhabditis elegans] 0.0
blast CAE73002 Hypothetical protein CBG20351 [Caenorhabditis briggsae] 1.0E-132
blast CAE73002 Hypothetical protein CBG20351 [Caenorhabditis briggsae] 1.0E-115
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000016135 1 577-599
Sequence
Target Sequence 
>C. ELEGANS:178321_AT
agcagttggagctgagccactaccacaaccagatgatgtacagattgctccgattccagc
agatgagcggcaggcacggtatgcacgtgttcaagcacgtctcggacatatgatgaatgc
gagaatgcggcagaatcaagaagatcagcaatattattacgatcagcaaccgccgaattt
gatggttgttggaacggctcatgcacattatcgtagacacatgaatgcacaagctcatca
gcaacaaagagagcccagttggaataattatgcagttgcaaatgctcctccagccataat
tcaaagaaatcttgatgctccagctccaatgttcggtgtcgcagtaaatgagccacaagt
tcaacggaatggcgatgattcgaatgactctacggatcgagaagagatttacgacgccga
gcagcagagacaagaagcgttgagagatttggtggctgatccagaagctcaaccaaattt
tgcgcccgtcgaagcacaggctgtaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCAGTTGGAGCTGAGCCACTACCA 631 77 1083 Antisense
AGCCACTACCACAACCAGATGATGT 119 85 1097 Antisense
TGATGTACAGATTGCTCCGATTCCA 462 567 1116 Antisense
GATTCCAGCAGATGAGCGGCAGGCA 640 433 1134 Antisense
GCGGCAGGCACGGTATGCACGTGTT 642 293 1149 Antisense
TATGCAGTTGCAAATGCTCCTCCAG 241 657 1351 Antisense
ATGCTCCTCCAGCCATAATTCAAAG 435 41 1364 Antisense
CAAAGAAATCTTGATGCTCCAGCTC 196 193 1384 Antisense
CTCCAATGTTCGGTGTCGCAGTAAA 637 235 1406 Antisense
GAAGAGATTTACGACGCCGAGCAGC 392 339 1483 Antisense
CGCCCGTCGAAGCACAGGCTGTAGA 158 257 1565 Antisense
Sequence Source Affymetrix Proprietary Database