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[178320_at]

Description R07D5.2 /REP_DB=WormBase Gene ID /WP=CE06280 /TR=Q21807 /GB=CAA94606.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 0      6grp_total > 24      4grp_total > 14      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 106.1
(-3)
P 		112.9
(-2.4)
P 		126.7
(-1.1)
P 		171.1
(3)
P 		65
B 103.9
(3)
P 		67.6
(-3)
A 		76.7
(-1.5)
A 		75.5
(-1.7)
P 		36
C 142.5
(3)
P 		84.9
(-1.8)
P 		71.1
(-3)
A 		132.2
(2.1)
A 		71
avr 117.5
(1.6) 		88.5
(-3) 		91.5
(-2.5) 		126.3
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 123.7
(3)
A 		66
(-1.5)
A 		122.6
(2.9)
P 		49.9
(-2.7)
A 		68.4
(-1.3)
A 		46.5
(-3)
A 		77
B 100.3
(1.6)
P 		116.4
(3)
P 		48.5
(-3)
A 		79
(-0.3)
A 		59.9
(-2)
P 		64.9
(-1.6)
M 		68
C 70
(-0.6)
P 		115.5
(3)
A 		58.2
(-1.5)
A 		77
(-0)
A 		39.7
(-3)
A 		53.7
(-1.9)
A 		76
avr 98
(2.8) 		99.3
(3) 		76.4
(-0.1) 		68.6
(-1.2) 		56
(-2.9) 		55
(-3) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 38.6
(3)
P 		24.5
(-3)
P 		33.1
(0.7)
P 		25
(-2.8)
P 		14
B 33.1
(3)
P 		16.7
(-2.8)
A 		17.8
(-2.4)
A 		16.1
(-3)
P 		17
C 47.2
(3)
P 		24.4
(-2.5)
P 		24.8
(-2.4)
A 		22.3
(-3)
A 		25
avr 39.6
(3) 		21.9
(-2.7) 		25.2
(-1.7) 		21.1
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 22.8
(1.5)
A 		23.5
(1.8)
A 		26.7
(3)
P 		12.7
(-2.5)
A 		20.6
(0.6)
A 		11.3
(-3)
A 		15
B 34.9
(2.2)
P 		38.7
(3)
P 		11.8
(-3)
A 		20.9
(-1)
A 		24.4
(-0.2)
P 		24.2
(-0.2)
M 		27
C 25.9
(0.5)
P 		35.3
(3)
A 		14.8
(-2.5)
A 		15.5
(-2.3)
A 		12.9
(-3)
A 		18
(-1.6)
A 		22
avr 27.9
(1.3) 		32.5
(3) 		17.8
(-2.5) 		16.4
(-3) 		19.3
(-1.9) 		17.8
(-2.5) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178320_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17710
Sequence Type Exemplar sequence
Representative Public ID R07D5.2 NCBI
Target Description R07D5.2 /REP_DB=WormBase Gene ID /WP=CE06280 /TR=Q21807 /GB=CAA94606.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078113(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078113 NCBI Caenorhabditis elegans R07D5.2 (R07D5.2) mRNA, complete cds. 11/11 None
SNAP00000025818 ENSEMBL cdna:SNAP chromosome:CEL140:X:15113096:15115847:-1 11/11 None
R07D5.2 ENSEMBL cdna:known chromosome:CEL140:X:15109867:15116526:-1 gene:R07D5.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000025824 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15113086-15116526(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R07D5.2
Entrez Gene 184224 Entrez gene
SwissProt Q21807 EMBL-EBI
WormBase CE37400 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAH60780 Hypothetical protein R07D5.2 [Caenorhabditis elegans] emb|CAA94606.2| Hypothetical protein R07D5.2 [Caenorhabditis elegans] ref|NP_510514.2| R07D5.2 [Caenorhabditis elegans] 0.0
blast CAE63256 Hypothetical protein CBG07628 [Caenorhabditis briggsae] 0.0
blast T20628 hypothetical protein F09B12.4 - Caenorhabditis elegans 1.0E-164
blast CAE63256 Hypothetical protein CBG07628 [Caenorhabditis briggsae] 1.0E-158
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510514.2 7 346-368,380-402,451-473,486-508,566-588,617-639,654-676
R07D5.2 7 346-368,380-402,451-473,486-508,566-588,617-639,654-676
SNAP00000025818 2 305-327,339-361
Sequence
Target Sequence 
>C. ELEGANS:178320_AT
ttcggcgccgcttttgaaatttcaagatttctttttaaggttttcaaggaattgtagtac
gttcaaaggtttcatctctcaggacagatcaaccaatattaccactatgggacaagcatt
aaccaaagacacacgtctccttttgcaacacttctcattggctgcaatcaaattgtggag
tcaacttgaagctgtccgtgcatgtcgttatgagacaaagtcgaattacacggagacata
tcttaatgagactgaagaagagaaaatggtgaagcttggaagcttgataactcataattg
ctgcccgtcaaataatatgcacatttgtgatctgaataatgaaaggaaataccaaaaaat
ggcgaagaatgcaaatttcggttttcgaatagaagcaggccttctcactgcaatattttt
caacacggttctgctatgcttcttactcggaaaaacttacaataagctctccacagccac
tattttatttgttctcaacattatgggttctaacattgccttcatgttttcattcttata
ctttttcgtcgacctcttgtaccaggata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCGGCGCCGCTTTTGAAATTTCAA 332 693 588 Antisense
GTTCAAAGGTTTCATCTCTCAGGAC 231 445 648 Antisense
AAAGACACACGTCTCCTTTTGCAAC 61 109 712 Antisense
TTTTGCAACACTTCTCATTGGCTGC 123 679 728 Antisense
TGAAGCTGTCCGTGCATGTCGTTAT 93 575 774 Antisense
TGATAACTCATAATTGCTGCCCGTC 258 565 872 Antisense
GGCCTTCTCACTGCAATATTTTTCA 475 543 985 Antisense
TTTCAACACGGTTCTGCTATGCTTC 189 671 1005 Antisense
CTCTCCACAGCCACTATTTTATTTG 14 233 1054 Antisense
TCATTCTTATACTTTTTCGTCGACC 238 619 1117 Antisense
TTCGTCGACCTCTTGTACCAGGATA 257 695 1132 Antisense
Sequence Source Affymetrix Proprietary Database