[Home] | [Total List]

[178319_s_at]

Description ZK262.2 /REP_DB=WormBase Gene ID /WP=CE19322 /TR=Q9XTR7 /GB=CAB16547.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 02      4grp_high_8_8 > 33      6grp_highest_nonorm > 50      6grp_total > 23      4grp_total > 46      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 537
1 2 3 4 range
A 654.9
(3)
P 		301
(-1.1)
P 		138.8
(-3)
A 		138.1
(-3)
P 		517
B 675.2
(3)
P 		204.7
(-2.4)
P 		149.7
(-3)
P 		148.4
(-3)
P 		527
C 637.7
(3)
P 		311.2
(-0.9)
P 		138.3
(-3)
P 		167.5
(-2.6)
P 		499
avr 655.9
(3) 		272.3
(-1.5) 		142.3
(-3) 		151.3
(-2.9) 		514

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 728
1 2 3 4 5 6 range
A 804
(3)
P 		577.4
(1)
P 		568.7
(0.9)
P 		328.9
(-1.2)
P 		129.6
(-2.9)
P 		121.8
(-3)
P 		682
B 809.9
(3)
P 		469.2
(0)
P 		584.3
(1)
P 		342.3
(-1.1)
P 		172
(-2.6)
P 		121.5
(-3)
P 		688
C 824.4
(3)
P 		454.4
(-0)
P 		655.6
(1.6)
P 		499.5
(0.3)
P 		167.6
(-2.4)
P 		96.4
(-3)
P 		728
avr 812.8
(3) 		500.3
(0.3) 		602.9
(1.2) 		390.2
(-0.6) 		156.4
(-2.6) 		113.2
(-3) 		700
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 218
1 2 3 4 range
A 238.5
(3)
P 		65.3
(-1.8)
P 		36.3
(-2.6)
A 		20.2
(-3)
P 		218
B 215.3
(3)
P 		50.5
(-2.4)
P 		34.7
(-2.9)
P 		31.6
(-3)
P 		184
C 211.1
(3)
P 		89.5
(-1)
P 		48.2
(-2.3)
P 		28.2
(-3)
P 		183
avr 221.6
(3) 		68.4
(-1.7) 		39.7
(-2.6) 		26.7
(-3) 		195

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 276
1 2 3 4 5 6 range
A 148.2
(1)
P 		205.3
(3)
P 		123.8
(0.2)
P 		83.4
(-1.2)
P 		39.1
(-2.7)
P 		29.7
(-3)
P 		176
B 281.8
(3)
P 		156.2
(-0.2)
P 		141.9
(-0.5)
P 		90.7
(-1.8)
P 		69.9
(-2.4)
P 		45.3
(-3)
P 		237
C 305.6
(3)
P 		138.7
(-0.7)
P 		166.9
(-0)
P 		100.5
(-1.5)
P 		54.2
(-2.5)
P 		32.3
(-3)
P 		273
avr 245.2
(3) 		166.7
(0.8) 		144.2
(0.1) 		91.5
(-1.4) 		54.4
(-2.5) 		35.8
(-3) 		209
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178319_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14137
Sequence Type Exemplar sequence
Representative Public ID ZK262.2 NCBI
Target Description ZK262.2 /REP_DB=WormBase Gene ID /WP=CE19322 /TR=Q9XTR7 /GB=CAB16547.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075201(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075201 NCBI Caenorhabditis elegans ZK262.2 (ZK262.2) mRNA, complete cds. 11/11 None
SNAP00000013659 ENSEMBL cdna:SNAP chromosome:CEL140:V:18413371:18415392:-1 11/11 None
GENEFINDER00000013669 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18404457:18415503:-1 11/11 None
ZK262.2 ENSEMBL cdna:known chromosome:CEL140:V:18413371:18415540:-1 gene:ZK262.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18413370-18415503(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK262.2
Entrez Gene 180197 Entrez gene
SwissProt Q9XTR7 EMBL-EBI
WormBase CE19322 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6629 lipid metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
4806 triacylglycerol lipase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB16547 Hypothetical protein ZK262.2 [Caenorhabditis elegans] ref|NP_507602.1| ZK262.2 [Caenorhabditis elegans] 0.0
blast CAB16546 Hypothetical protein ZK262.3 [Caenorhabditis elegans] ref|NP_507603.1| ZK262.3 [Caenorhabditis elegans] 1.0E-179
blast CAB16545 Hypothetical protein ZK262.1 [Caenorhabditis elegans] ref|NP_507601.2| Serpentine Receptor, class H family member (srh-207) [Caenorhabditis elegans] 1.0E-173
blast CAB16546 Hypothetical protein ZK262.3 [Caenorhabditis elegans] ref|NP_507603.1| ZK262.3 [Caenorhabditis elegans] 1.0E-168
blast CAB16546 Hypothetical protein ZK262.3 [Caenorhabditis elegans] ref|NP_507603.1| ZK262.3 [Caenorhabditis elegans] 1.0E-164
blast CAE56202 Hypothetical protein CBG23826 [Caenorhabditis briggsae] 1.0E-128
Protein Domains
Database ID Description E-Value
Pfam IPR002921 EMBL-EBI Lipase, class 3 6.4E-53
Pfam IPR002921 EMBL-EBI Lipase, class 3 6.4E-53
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.5E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.7E-15
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.5E-119
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000013669 12 443-465,478-500,520-542,563-585,628-650,671-693,837-859,872-894,914-936,957-979,1018-1040,1061-1083
Sequence
Target Sequence 
>C. ELEGANS:178319_S_AT
gattttgcgaattcctacgaccagctggtgccgtacagtttccgagtagtccatgctatc
gatgtggtgccccacctacccggatgcgtgaaggatttgtcctacaccccgccggcggga
agtgatggctcaatgccgtgtgatccggggagtaggaatggaggctatcaccacgccatc
gaagttttctacccgggaaacatggcaccaggagacccctacatgatttgcaccggtctc
ccccgcaacgaagatttcggatgctccaacgctccgaaagtcgacctagacgacactaac
caaggcgtctgggatcaccgaaattattttggagtcgaggtgccagcatatggaaaagga
ggatgcgacccgacaatgaccttcaagggcccgccaacagaaacagggatcctgtcgctg
attagta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTTGCGAATTCCTACGACCAGC 605 429 613 Antisense
TGCCGTACAGTTTCCGAGTAGTCCA 706 583 641 Antisense
TCCATGCTATCGATGTGGTGCCCCA 629 589 662 Antisense
ATGGCTCAATGCCGTGTGATCCGGG 335 51 737 Antisense
TCTACCCGGGAAACATGGCACCAGG 498 611 800 Antisense
GACCCCTACATGATTTGCACCGGTC 100 381 826 Antisense
GAAGATTTCGGATGCTCCAACGCTC 344 337 862 Antisense
CCAACGCTCCGAAAGTCGACCTAGA 195 275 878 Antisense
CAAGGCGTCTGGGATCACCGAAATT 383 183 913 Antisense
GCGACCCGACAATGACCTTCAAGGG 445 277 977 Antisense
ACAGGGATCCTGTCGCTGATTAGTA 250 107 1015 Antisense
Sequence Source Affymetrix Proprietary Database