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[178318_at]

Description F57G4.9 /REP_DB=WormBase Gene ID /WP=CE18774 /TR=Q9XUX1 /GB=CAB04511.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 38      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 13.3
(0.4)
A 		5.8
(-3)
A 		7.5
(-2.2)
A 		18.9
(3)
A 		13
B 39.7
(3)
A 		11.5
(-1.7)
A 		3.8
(-3)
A 		6
(-2.6)
A 		36
C 9.9
(2.7)
A 		8
(1.1)
A 		3.2
(-3)
A 		10.3
(3)
A 		7
avr 21
(3) 		8.4
(-1.7) 		4.8
(-3) 		11.7
(-0.4) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 17.6
(2.3)
A 		10.6
(-3)
A 		18
(2.6)
A 		12.3
(-1.7)
A 		18.6
(3)
A 		10.7
(-2.9)
A 		8
B 5.6
(-2.6)
A 		6.7
(-1.9)
A 		6
(-2.3)
A 		14.7
(3)
A 		4.9
(-3)
A 		8.1
(-1)
A 		10
C 11.2
(-0.3)
A 		17.7
(3)
A 		17.4
(2.8)
A 		5.8
(-3)
A 		17
(2.6)
A 		10.7
(-0.5)
A 		12
avr 11.5
(-0.5) 		11.7
(-0.2) 		13.8
(3) 		10.9
(-1.4) 		13.5
(2.6) 		9.8
(-3) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 4.8
(3)
A 		1.3
(-3)
A 		2
(-1.8)
A 		2.8
(-0.4)
A 		4
B 12.7
(3)
A 		2.8
(-2)
A 		0.9
(-3)
A 		1.3
(-2.8)
A 		12
C 3.3
(3)
A 		2.3
(0.3)
A 		1.1
(-3)
A 		1.7
(-1.4)
A 		2
avr 6.9
(3) 		2.1
(-2.1) 		1.3
(-3) 		1.9
(-2.4) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 3.2
(-1.8)
A 		3.8
(-0.6)
A 		3.9
(-0.4)
A 		3.1
(-2)
A 		5.6
(3)
A 		2.6
(-3)
A 		3
B 2
(-1.8)
A 		2.2
(-1.3)
A 		1.5
(-3)
A 		3.9
(3)
A 		2
(-1.8)
A 		3
(0.8)
A 		2
C 4.2
(1.2)
A 		5.4
(2.9)
A 		4.4
(1.5)
A 		1.2
(-3)
A 		5.5
(3)
A 		3.6
(0.3)
A 		4
avr 3.1
(-1.6) 		3.8
(0.9) 		3.3
(-0.9) 		2.7
(-3) 		4.4
(3) 		3.1
(-1.6) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178318_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13476
Sequence Type Exemplar sequence
Representative Public ID F57G4.9 NCBI
Target Description F57G4.9 /REP_DB=WormBase Gene ID /WP=CE18774 /TR=Q9XUX1 /GB=CAB04511.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075062(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075062 NCBI Caenorhabditis elegans F57G4.9 (F57G4.9) mRNA, complete cds. 11/11 None
SNAP00000009862 ENSEMBL cdna:SNAP chromosome:CEL140:V:17646595:17647420:-1 11/11 None
GENEFINDER00000009865 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17646595:17651290:-1 11/11 None
F57G4.9 ENSEMBL cdna:known chromosome:CEL140:V:17646595:17647342:-1 gene:F57G4.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl F57G4.9
Entrez Gene 186463 Entrez gene
SwissProt Q9XUX1 EMBL-EBI
WormBase CE18774 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04511 Hypothetical protein F57G4.9 [Caenorhabditis elegans] ref|NP_507463.1| F57G4.9 [Caenorhabditis elegans] 1.0E-133
blast CAB04511 Hypothetical protein F57G4.9 [Caenorhabditis elegans] ref|NP_507463.1| F57G4.9 [Caenorhabditis elegans] 1.0E-132
blast T22867 hypothetical protein F57G4.7 - Caenorhabditis elegans 1.0E-117
blast CAB04505 Hypothetical protein F57G4.6 [Caenorhabditis elegans] ref|NP_507462.1| F57G4.6 [Caenorhabditis elegans] 1.0E-100
blast XP_697772 PREDICTED: similar to PC4 and SFRS1 interacting protein 1 [Danio rerio] 1.0E-32
blast XP_697772 PREDICTED: similar to PC4 and SFRS1 interacting protein 1 [Danio rerio] 5.0E-32
blast XP_795502 PREDICTED: similar to putative cytoplasmic protein of eukaryotic origin (5S122) [Strongylocentrotus purpuratus] 7.0E-32
Sequence
Target Sequence 
>C. ELEGANS:178318_AT
agcacatattacggtgtctcggctctctcgacggaaaacatattcgaatcaaagctccac
cacattccggttctctgtttttcaattacaaacacttcttctcgtttgttttgctcgttg
tagtagacgctgacggccgtgtcatttgggtcgatgttggatcaccgggatcgaacaatg
atgcttcaattttttctgattcaaaattgaaaacaattttagatgaagaagcaaaccttc
caccgccaactttctggagtcgagattttgttgtcaagccttttgtaattgccgatggaa
ttttcaaaattactccaaggatgatgacactgtacggaggaaatggattaaatatttctc
aaaaagttttaaacaaaaaattgtctcgagctagagtcaaagcggaacacgctttcggaa
gattaagtgcaaaatttcgaattttgagaagagaaatggaatgtccatacgaaaaatctg
tggatatcattctggccttgtgtcatcttcacaattacttaatcggaaaggcggaagatg
ttgttaacgttcccatcgagaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCACATATTACGGTGTCTCGGCTC 631 75 80 Antisense
CTCGGCTCTCTCGACGGAAAACATA 107 233 97 Antisense
ATATTCGAATCAAAGCTCCACCACA 323 19 119 Antisense
AACACTTCTTCTCGTTTGTTTTGCT 696 135 170 Antisense
TTGTAGTAGACGCTGACGGCCGTGT 546 613 197 Antisense
TTGGGTCGATGTTGGATCACCGGGA 256 709 225 Antisense
ATGAAGAAGCAAACCTTCCACCGCC 324 43 302 Antisense
CACCGCCAACTTTCTGGAGTCGAGA 159 201 320 Antisense
AAGCCTTTTGTAATTGCCGATGGAA 554 147 355 Antisense
GATATCATTCTGGCCTTGTGTCATC 181 427 562 Antisense
TGTTGTTAACGTTCCCATCGAGACA 683 561 618 Antisense
Sequence Source Affymetrix Proprietary Database