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[178317_at]

Description F28B1.2 /REP_DB=WormBase Gene ID /WP=CE15914 /TR=O45412 /GB=CAB04209.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 85      4grp_total > 22      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 9.1
(0.2)
A 		8.2
(-0.3)
A 		14.2
(3)
A 		3.2
(-3)
A 		11
B 6.8
(-2.1)
A 		20
(1.2)
A 		3
(-3)
A 		27.2
(3)
A 		24
C 49.2
(3)
A 		7.4
(-2.3)
A 		2.1
(-3)
A 		39
(1.7)
A 		47
avr 21.7
(2.5) 		11.9
(-1) 		6.4
(-3) 		23.1
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 4.2
(-2)
A 		2.2
(-3)
A 		3.6
(-2.3)
A 		5.7
(-1.2)
A 		14.1
(3)
A 		5.3
(-1.4)
A 		12
B 4.1
(-2.7)
A 		27.3
(1.7)
A 		2.7
(-3)
A 		34
(3)
A 		11.6
(-1.3)
A 		30.7
(2.4)
A 		31
C 2.5
(-3)
A 		2.9
(-2.8)
A 		16.4
(3)
A 		3.9
(-2.4)
A 		4.9
(-2)
A 		15.2
(2.5)
A 		14
avr 3.6
(-3) 		10.8
(0.2) 		7.6
(-1.2) 		14.5
(1.8) 		10.2
(-0.1) 		17.1
(3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 3.3
(2.3)
A 		1.8
(-0.6)
A 		3.7
(3)
A 		0.5
(-3)
A 		3
B 2.2
(-1.2)
A 		4.9
(1.9)
A 		0.7
(-3)
A 		5.8
(3)
A 		5
C 16.3
(3)
A 		2.1
(-2.5)
A 		0.7
(-3)
A 		6.6
(-0.7)
A 		16
avr 7.3
(3) 		2.9
(-1.7) 		1.7
(-3) 		4.3
(-0.2) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 0.8
(-3)
A 		0.8
(-3)
A 		0.8
(-3)
A 		1.5
(-1.8)
A 		4.3
(3)
A 		1.3
(-2.1)
A 		4
B 1.4
(-2.6)
A 		9.1
(1.7)
A 		0.7
(-3)
A 		9
(1.7)
A 		4.7
(-0.8)
A 		11.4
(3)
A 		11
C 0.9
(-2.9)
A 		0.9
(-2.9)
A 		4.2
(1.7)
A 		0.8
(-3)
A 		1.6
(-1.9)
A 		5.1
(3)
A 		4
avr 1
(-3) 		3.6
(0.2) 		1.9
(-1.9) 		3.8
(0.4) 		3.5
(0.1) 		5.9
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178317_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13980
Sequence Type Exemplar sequence
Representative Public ID F28B1.2 NCBI
Target Description F28B1.2 /REP_DB=WormBase Gene ID /WP=CE15914 /TR=O45412 /GB=CAB04209.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074916(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074916 NCBI Caenorhabditis elegans F28B1.2 (F28B1.2) mRNA, complete cds. 11/11 None
SNAP00000006326 ENSEMBL cdna:SNAP chromosome:CEL140:V:17047382:17052340:1 11/11 None
GENEFINDER00000006336 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17047382:17052340:1 11/11 None
F28B1.2 ENSEMBL cdna:known chromosome:CEL140:V:17047487:17052400:1 gene:F28B1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17047486-17052340(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F28B1.2
Entrez Gene 180134 Entrez gene
SwissProt O45412 EMBL-EBI
WormBase CE15914 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04209 Hypothetical protein F28B1.2 [Caenorhabditis elegans] ref|NP_507317.1| F28B1.2 [Caenorhabditis elegans] 0.0
blast CAB04208 Hypothetical protein F28B1.1 [Caenorhabditis elegans] ref|NP_507316.1| F28B1.1 [Caenorhabditis elegans] 1.0E-132
blast CAB03916 Hypothetical protein C25F9.8 [Caenorhabditis elegans] ref|NP_507774.1| C25F9.8 [Caenorhabditis elegans] 3.0E-76
Sequence
Target Sequence 
>C. ELEGANS:178317_AT
gaatgtcatcggcaactgatcaatgtgattttatcgatgcgacatgctcggccagtgatc
gcaaaccatttttatattctactacaactcatcagatatatagtggaactggaaaaacat
attatgaatcagaaaccgtacgatatgaagatcttctttgtgtaagaggggaactcaaat
ggtacatcgggaaccttaagttagaaaacctagtcataaaatgcattaccgacgtagaag
tatacaatgaggaggcttccacgtcttgtggagttttcaaagttgtcacaagtttggaag
attatcatgtaattggagtctattcacaagtacaacttggaatcaacttgtggacaccag
gcaacgatttccagatcacctgtgagcctggtttcataccagtcgtatacagtgcaaaca
atcaaccaatcgagatctccgaccctgcacatcggattaaatgtgcctacagcccactgt
ccaactacgcctccatgtgggttgtagacggtatcagagtctttgatccagctgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGTCATCGGCAACTGATCAATG 602 331 2357 Antisense
TTTATCGATGCGACATGCTCGGCCA 463 671 2386 Antisense
GCCAGTGATCGCAAACCATTTTTAT 144 281 2407 Antisense
CAATGAGGAGGCTTCCACGTCTTGT 152 183 2601 Antisense
GACACCAGGCAACGATTTCCAGATC 609 367 2709 Antisense
AGATCACCTGTGAGCCTGGTTTCAT 488 61 2729 Antisense
ATCAACCAATCGAGATCTCCGACCC 251 25 2777 Antisense
TCTCCGACCCTGCACATCGGATTAA 31 611 2792 Antisense
ATTAAATGTGCCTACAGCCCACTGT 181 13 2812 Antisense
CAACTACGCCTCCATGTGGGTTGTA 564 187 2838 Antisense
GTATCAGAGTCTTTGATCCAGCTGG 584 453 2867 Antisense
Sequence Source Affymetrix Proprietary Database