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[178316_at]

Description C29F7.2 /REP_DB=WormBase Gene ID /WP=CE08443 /TR=O17621 /GB=CAB07327.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 58      6grp_high1_10_10 > 84      4grp_highest_8_8 > 13      4grp_high_8_8 > 23      6grp_highest_nonorm > 97      6grp_total > 75      4grp_total > 16      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2108
1 2 3 4 range
A 1525.8
(-3)
P 		1662.6
(-2.2)
P 		2172.1
(0.6)
P 		2595.2
(3)
P 		1069
B 1602.9
(-3)
P 		2161.9
(-1.3)
P 		2516.1
(-0.3)
P 		3634.1
(3)
P 		2031
C 1596.4
(-3)
P 		2105.9
(-0.9)
P 		2356.6
(0.2)
P 		3025.4
(3)
P 		1429
avr 1575
(-3) 		1976.8
(-1.4) 		2348.3
(0.1) 		3084.9
(3) 		1510

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 827
1 2 3 4 5 6 range
A 892.3
(-2)
P 		821.1
(-3)
P 		1160.3
(1.9)
P 		1161.5
(1.9)
P 		1031.4
(0)
P 		1237.9
(3)
P 		417
B 926.6
(-0.8)
P 		798.7
(-3)
P 		1092.1
(2)
P 		1044.4
(1.2)
P 		1106.3
(2.2)
P 		1151.7
(3)
P 		353
C 913.3
(-2)
P 		781.8
(-3)
P 		998.6
(-1.4)
P 		1160.7
(-0.3)
P 		969.4
(-1.6)
P 		1608.8
(3)
P 		827
avr 910.7
(-1.8) 		800.5
(-3) 		1083.7
(0.2) 		1122.2
(0.6) 		1035.7
(-0.3) 		1332.8
(3) 		532
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 460
1 2 3 4 range
A 555.5
(2.6)
P 		360.9
(-3)
P 		567.8
(3)
P 		379.9
(-2.4)
P 		207
B 511.1
(-3)
P 		533.9
(-2.5)
P 		583
(-1.4)
P 		774.4
(3)
P 		263
C 528.4
(-2.6)
P 		605.5
(-1.2)
P 		821.3
(3)
P 		510.1
(-3)
P 		311
avr 531.7
(-1.8) 		500.1
(-3) 		657.4
(3) 		554.8
(-0.9) 		157

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 374
1 2 3 4 5 6 range
A 164.5
(-3)
P 		292
(2.2)
P 		252.7
(0.6)
P 		294.6
(2.3)
P 		311.2
(3)
P 		301.4
(2.6)
P 		147
B 322.4
(-1.1)
P 		265.9
(-3)
P 		265.2
(-3)
P 		276.6
(-2.6)
P 		449.5
(3)
P 		429.5
(2.3)
P 		184
C 338.5
(-0.9)
P 		238.6
(-2.9)
P 		254.2
(-2.6)
P 		233.4
(-3)
P 		313.7
(-1.4)
P 		538.6
(3)
P 		305
avr 275.1
(-2.4) 		265.5
(-2.7) 		257.4
(-3) 		268.2
(-2.6) 		358.1
(0.6) 		423.2
(3) 		166
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178316_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17422
Sequence Type Exemplar sequence
Representative Public ID C29F7.2 NCBI
Target Description C29F7.2 /REP_DB=WormBase Gene ID /WP=CE08443 /TR=O17621 /GB=CAB07327.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077834(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077834 NCBI Caenorhabditis elegans C29F7.2 (C29F7.2) mRNA, complete cds. 11/11 None
SNAP00000036547 ENSEMBL cdna:SNAP chromosome:CEL140:X:13416005:13418022:1 11/11 None
GENEFINDER00000036558 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13416005:13418022:1 11/11 None
C29F7.2 ENSEMBL cdna:known chromosome:CEL140:X:13415999:13418129:1 gene:C29F7.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13416004-13418022(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C29F7.2
Entrez Gene 181463 Entrez gene
SwissProt O17621 EMBL-EBI
WormBase CE35414 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07327 Hypothetical protein C29F7.2 [Caenorhabditis elegans] ref|NP_510235.2| C29F7.2 [Caenorhabditis elegans] 0.0
blast CAE61448 Hypothetical protein CBG05337 [Caenorhabditis briggsae] 0.0
blast CAE61448 Hypothetical protein CBG05337 [Caenorhabditis briggsae] 1.0E-174
blast CAB07326 Hypothetical protein C29F7.1 [Caenorhabditis elegans] ref|NP_510234.1| C29F7.1 [Caenorhabditis elegans] 1.0E-155
Sequence
Target Sequence 
>C. ELEGANS:178316_AT
aatggctggctactttcaaacaatggtcgcaggcatcggagaaaagttggctcaacaacc
cgggcttgagcttgtctcgacgtatatcaagaacacatttgctacagatccaaaattttt
gcaaaacattaatgatgagtacctggaagaaagaagaatttccgttctcactcatggaga
tctttgggccccacaaattctctgggataaaaatgatgacatcgctggaattattgactg
gcaaattacgcatcgtggaagtcccatggaagacttccatcatattatgtcgacctgcac
gtctgtggaaaatcgtaaaaatctgacaaaaccattgctggactactattttgacaaact
aagctctggattagaagcaaaaggcgtgaaaatgccttggacgagagaagagattgagga
ggaatacaagtacagttttatcaacggcgccgcactcacaatctttgccaatggtttttg
ggccaattctccagttcttcaaactgatggaaaaccagatccagtacgaatcggcgagtc
ct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGGCTGGCTACTTTCAAACAATG 632 161 579 Antisense
GGCTTGAGCTTGTCTCGACGTATAT 456 537 641 Antisense
AGAAGAATTTCCGTTCTCACTCATG 173 75 730 Antisense
TCACTCATGGAGATCTTTGGGCCCC 302 627 746 Antisense
TTTGGGCCCCACAAATTCTCTGGGA 325 665 761 Antisense
TTACGCATCGTGGAAGTCCCATGGA 359 681 824 Antisense
TGTCGACCTGCACGTCTGTGGAAAA 363 557 866 Antisense
AACCATTGCTGGACTACTATTTTGA 421 147 908 Antisense
CCGCACTCACAATCTTTGCCAATGG 582 263 1028 Antisense
ATGGTTTTTGGGCCAATTCTCCAGT 347 49 1049 Antisense
GATCCAGTACGAATCGGCGAGTCCT 680 415 1096 Antisense
Sequence Source Affymetrix Proprietary Database