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[178315_at]

Description K08C7.7 /REP_DB=WormBase Gene ID /WP=CE21039 /TR=Q9XVV6 /GB=CAA94296.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 51      4grp_highest_8_8 > 07      4grp_high_8_8 > 29      6grp_highest_nonorm > 90      6grp_total > 62      4grp_total > 26      6grp_highest_sub > 04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 124.8
(3)
P 		89.2
(-3)
P 		109.1
(0.4)
P 		115
(1.3)
P 		36
B 111.8
(-2.7)
P 		138
(3)
P 		110.5
(-3)
P 		126.8
(0.6)
P 		28
C 123.9
(-3)
P 		173.4
(1.8)
P 		146
(-0.8)
P 		185.4
(3)
P 		62
avr 120.2
(-3) 		133.5
(0.6) 		121.9
(-2.5) 		142.4
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 190
1 2 3 4 5 6 range
A 97.6
(-1.9)
P 		132.8
(-0.8)
P 		252.8
(3)
P 		228.6
(2.2)
P 		130.5
(-0.9)
P 		63.1
(-3)
P 		190
B 96.3
(-2.1)
P 		130.3
(-0.7)
P 		222.2
(3)
P 		178.8
(1.2)
P 		145.8
(-0.1)
P 		74.8
(-3)
P 		147
C 154
(1.6)
P 		146.5
(1.1)
P 		144.7
(1)
P 		172.6
(2.8)
P 		174.9
(3)
P 		85.3
(-3)
P 		90
avr 116
(-1.1) 		136.5
(-0.2) 		206.6
(3) 		193.3
(2.4) 		150.4
(0.4) 		74.4
(-3) 		132
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 45.5
(3)
P 		19.4
(-2.5)
P 		28.5
(-0.6)
P 		16.8
(-3)
P 		29
B 35.6
(3)
P 		34.1
(2.1)
P 		25.6
(-3)
P 		27
(-2.2)
P 		10
C 41
(-0)
P 		49.9
(2.7)
P 		50.9
(3)
P 		31.3
(-3)
P 		20
avr 40.7
(3) 		34.5
(0.6) 		35
(0.8) 		25
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 18
(-2.6)
P 		47.2
(1.5)
P 		55.1
(2.6)
P 		58
(3)
P 		39.4
(0.4)
P 		15.4
(-3)
P 		43
B 33.5
(-1.9)
P 		43.4
(-0)
P 		54
(2)
P 		47.4
(0.7)
P 		59.2
(3)
P 		27.9
(-3)
P 		31
C 57.1
(3)
P 		44.7
(0.4)
P 		36.8
(-1.3)
P 		34.7
(-1.7)
P 		56.6
(2.9)
P 		28.6
(-3)
P 		29
avr 36.2
(-0.4) 		45.1
(1.6) 		48.6
(2.3) 		46.7
(1.9) 		51.7
(3) 		24
(-3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178315_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8396
Sequence Type Exemplar sequence
Representative Public ID K08C7.7 NCBI
Target Description K08C7.7 /REP_DB=WormBase Gene ID /WP=CE21039 /TR=Q9XVV6 /GB=CAA94296.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069568(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069568 NCBI Caenorhabditis elegans K08C7.7 (K08C7.7) mRNA, complete cds. 11/11 None
SNAP00000016922 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10664852:10665619:1 11/11 None
GENEFINDER00000016931 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10664408:10665619:1 11/11 None
K08C7.7 ENSEMBL cdna:known chromosome:CEL140:IV:10664393:10665619:1 gene:K08C7.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10664413-10665625(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K08C7.7
Entrez Gene 177955 Entrez gene
SwissProt Q9XVV6 EMBL-EBI
WormBase CE21039 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94296 Hypothetical protein K08C7.7 [Caenorhabditis elegans] ref|NP_501969.1| K08C7.7 [Caenorhabditis elegans] 1.0E-154
blast CAE60740 Hypothetical protein CBG04424 [Caenorhabditis briggsae] 1.0E-107
blast CAA94296 Hypothetical protein K08C7.7 [Caenorhabditis elegans] ref|NP_501969.1| K08C7.7 [Caenorhabditis elegans] 1.0E-101
blast CAE60740 Hypothetical protein CBG04424 [Caenorhabditis briggsae] 2.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.0E-4
Sequence
Target Sequence 
>C. ELEGANS:178315_AT
atttcattcgttttctgcatcacatgaatcaatttgtcaactcttgcaagcttcgaaatg
tcgaggtatcaactttgaagctgtggaaagtaaattaatatcaaaggatctttctctaaa
tggatatcgaaatttgaattccatttgtttcgaaatggacgatagtatcgacggaaattt
tttcgcgtcggtattggatatttcagaagcaagaaagtttattttccatgcatgcgataa
tattccaaaggaatttgtgagaattatgttcgaaaaatttctggatggaactcgcgagtt
cgatgctgtccgtattaccactaatcagaatttttcatttgatgaaataattgctgattt
gaatatccaaaaattggacaattctacatggaaaatgaaaagtaccagaggagatgaagc
tacgatcacaatgcgtcgaaacaatttccatttcttcgttgcgtttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTCATTCGTTTTCTGCATCACAT 59 17 387 Antisense
ATGAATCAATTTGTCAACTCTTGCA 508 43 410 Antisense
ACTCTTGCAAGCTTCGAAATGTCGA 378 99 426 Antisense
GAAATGTCGAGGTATCAACTTTGAA 430 361 441 Antisense
TTTTCGCGTCGGTATTGGATATTTC 66 677 566 Antisense
AAAGTTTATTTTCCATGCATGCGAT 289 123 600 Antisense
AATTTCTGGATGGAACTCGCGAGTT 232 175 662 Antisense
GGAACTCGCGAGTTCGATGCTGTCC 679 529 673 Antisense
GATGCTGTCCGTATTACCACTAATC 24 415 688 Antisense
GAAGCTACGATCACAATGCGTCGAA 123 343 802 Antisense
ATTTCCATTTCTTCGTTGCGTTTGA 594 17 830 Antisense
Sequence Source Affymetrix Proprietary Database