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[178314_at]

Description W04G5.8 /REP_DB=WormBase Gene ID /WP=CE14596 /TR=O18172 /GB=CAB07684.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 29      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 34.1
(-0.5)
A 		20.1
(-2.5)
A 		16.1
(-3)
A 		59.8
(3)
A 		44
B 37.6
(1.7)
A 		30.3
(-1.8)
A 		40.2
(3)
A 		27.8
(-3)
A 		12
C 34.6
(0.7)
A 		44
(3)
A 		23.5
(-2.1)
A 		19.8
(-3)
A 		24
avr 35.4
(2.7) 		31.5
(0.2) 		26.6
(-3) 		35.8
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 72.4
(3)
A 		22.4
(-1.5)
A 		52
(1.2)
P 		34.5
(-0.4)
A 		5.1
(-3)
A 		29.3
(-0.8)
A 		67
B 38.9
(3)
A 		38.8
(3)
A 		32.6
(0.8)
A 		21.7
(-3)
A 		29.8
(-0.2)
A 		36.9
(2.3)
A 		17
C 45.7
(1.4)
A 		38
(0.6)
A 		4.3
(-3)
A 		60.8
(3)
M 		7.4
(-2.7)
A 		5.7
(-2.9)
A 		57
avr 52.3
(3) 		33.1
(-0) 		29.6
(-0.6) 		39
(0.9) 		14.1
(-3) 		24
(-1.4) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 12.4
(3)
A 		4.4
(-2.9)
A 		4.2
(-3)
A 		8.7
(0.3)
A 		8
B 12
(3)
A 		7.5
(-1.4)
A 		9.3
(0.3)
A 		5.9
(-3)
A 		6
C 11.5
(2.2)
A 		12.7
(3)
A 		8.2
(0.1)
A 		3.3
(-3)
A 		9
avr 12
(3) 		8.2
(-0.8) 		7.2
(-1.8) 		6
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 13.4
(3)
A 		8
(0.3)
A 		11.3
(1.9)
P 		8.8
(0.7)
A 		1.5
(-3)
A 		7.1
(-0.2)
A 		12
B 13.5
(2.9)
A 		12.9
(2.4)
A 		7.9
(-1.4)
A 		5.7
(-3)
A 		12.1
(1.8)
A 		13.7
(3)
A 		8
C 16.9
(3)
A 		11.6
(1)
A 		1.1
(-3)
A 		12.2
(1.2)
M 		2.4
(-2.5)
A 		1.9
(-2.7)
A 		16
avr 14.6
(3) 		10.8
(0.5) 		6.8
(-2) 		8.9
(-0.7) 		5.3
(-3) 		7.6
(-1.5) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178314_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.700
Sequence Type Exemplar sequence
Representative Public ID W04G5.8 NCBI
Target Description W04G5.8 /REP_DB=WormBase Gene ID /WP=CE14596 /TR=O18172 /GB=CAB07684.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060571(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060571 NCBI Caenorhabditis elegans W04G5.8 (W04G5.8) mRNA, complete cds. 11/11 None
SNAP00000044255 ENSEMBL cdna:SNAP chromosome:CEL140:I:11658104:11659129:1 11/11 None
W04G5.8 ENSEMBL cdna:known chromosome:CEL140:I:11658104:11659129:1 gene:W04G5.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11658034-11659060(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W04G5.8
Entrez Gene 189203 Entrez gene
SwissProt O18172 EMBL-EBI
WormBase CE14596 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07684 Hypothetical protein W04G5.8 [Caenorhabditis elegans] ref|NP_492972.1| W04G5.8 [Caenorhabditis elegans] 1.0E-142
blast CAB07683 Hypothetical protein W04G5.7 [Caenorhabditis elegans] ref|NP_492973.1| W04G5.7 [Caenorhabditis elegans] 1.0E-120
blast AAF60895 Hypothetical protein Y94H6A.2 [Caenorhabditis elegans] ref|NP_500249.1| Y94H6A.2 [Caenorhabditis elegans] 5.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR007767 EMBL-EBI Protein of unknown function DUF684 3.2E-55
Sequence
Target Sequence 
>C. ELEGANS:178314_AT
gatccggttatgctcaagcttatcgagcttgacaagaaaatcacgcaactttccgacaag
atgtcatgggagttcgatagcctaaaggccttcatagtagaacacgagttttacgcggat
ctggtgcaaaccgcctcgacgttaatgaagttcatgcaggatacagtcaaggatccttgt
aaggatagttatgcaattttcagagatgtgtcgcagaaatctccaccattgcagtacgct
tataaaatgataagtcttttggagcaagagtcgacgaatccattaaaaatggcaatgaaa
gccgacccattgagaacttcggaaactttcgataagtggagaaatatcattgacggcgtg
attacccaatttctgttcctcgagacttatatcaatggtatattctgggataagaatatg
tatggcccgaagcttctgacagaacgcatcacccacctgaatgagcaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCCGGTTATGCTCAAGCTTATCG 122 417 169 Antisense
AAAATCACGCAACTTTCCGACAAGA 641 131 205 Antisense
GATGTCATGGGAGTTCGATAGCCTA 2 409 228 Antisense
ATAGCCTAAAGGCCTTCATAGTAGA 705 19 245 Antisense
AGAACACGAGTTTTACGCGGATCTG 91 71 267 Antisense
GCAATTTTCAGAGATGTGTCGCAGA 158 323 361 Antisense
TTGACGGCGTGATTACCCAATTTCT 657 687 518 Antisense
CCAATTTCTGTTCCTCGAGACTTAT 598 275 534 Antisense
ATATGTATGGCCCGAAGCTTCTGAC 619 21 584 Antisense
AAGCTTCTGACAGAACGCATCACCC 110 151 598 Antisense
CGCATCACCCACCTGAATGAGCAGA 328 255 613 Antisense
Sequence Source Affymetrix Proprietary Database