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[178313_at]

Description T02G6.6 /REP_DB=WormBase Gene ID /WP=CE18177 /TR=O62359 /GB=CAB04674.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 27      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 26.9
(-1.5)
A 		6
(-3)
A 		29.4
(-1.3)
A 		89.1
(3)
A 		83
B 23.9
(-1.5)
A 		60.2
(3)
A 		35.1
(-0.1)
A 		12
(-3)
A 		48
C 49.5
(-0.5)
A 		82.1
(2.9)
A 		26.1
(-3)
A 		83.4
(3)
A 		57
avr 33.4
(-2.4) 		49.4
(0.7) 		30.2
(-3) 		61.5
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 37.3
(3)
A 		21.8
(-3)
A 		28.7
(-0.3)
A 		28.1
(-0.6)
A 		33.2
(1.4)
A 		26.7
(-1.1)
A 		16
B 8.9
(-1.3)
A 		9.5
(-1.2)
A 		11
(-0.8)
A 		25.9
(3)
A 		17.5
(0.9)
A 		2.4
(-3)
A 		24
C 25.4
(1.7)
A 		30.6
(3)
A 		23
(1.1)
A 		17.7
(-0.2)
A 		9.5
(-2.2)
A 		6.1
(-3)
A 		25
avr 23.9
(3) 		20.6
(1.4) 		20.9
(1.5) 		23.9
(3) 		20.1
(1.1) 		11.7
(-3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 9.8
(1.4)
A 		1.3
(-3)
A 		7.7
(0.3)
A 		13
(3)
A 		12
B 7.6
(-0.6)
A 		14.9
(3)
A 		8.1
(-0.3)
A 		2.6
(-3)
A 		12
C 16.4
(0)
A 		23.6
(3)
A 		9.1
(-3)
A 		14.1
(-0.9)
A 		15
avr 11.3
(0.6) 		13.3
(3) 		8.3
(-3) 		9.9
(-1.1) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 6.9
(-1.9)
A 		7.8
(-0.5)
A 		6.2
(-3)
A 		7.1
(-1.6)
A 		10
(3)
A 		6.5
(-2.5)
A 		4
B 3.1
(-0.9)
A 		3.2
(-0.8)
A 		2.7
(-1.3)
A 		6.9
(2.8)
A 		7.1
(3)
A 		0.9
(-3)
A 		6
C 9.4
(3)
A 		9.3
(2.9)
A 		5.8
(0.1)
A 		3.6
(-1.7)
A 		3.1
(-2.1)
A 		2
(-3)
A 		7
avr 6.5
(2.5) 		6.8
(3) 		4.9
(-0.1) 		5.9
(1.5) 		6.7
(2.8) 		3.1
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178313_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2224
Sequence Type Exemplar sequence
Representative Public ID T02G6.6 NCBI
Target Description T02G6.6 /REP_DB=WormBase Gene ID /WP=CE18177 /TR=O62359 /GB=CAB04674.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060603(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060603 NCBI Caenorhabditis elegans T02G6.6 (T02G6.6) mRNA, complete cds. 11/11 None
GENEFINDER00000017976 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11827661:11830711:1 11/11 None
T02G6.6 ENSEMBL cdna:known chromosome:CEL140:I:11827661:11830711:1 gene:T02G6.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017970 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11827591-11830642(+) 98.41 100.0
Public Domain and Genome References
Gene Title
Ensembl T02G6.6
Entrez Gene 188000 Entrez gene
SwissProt O62359 EMBL-EBI
WormBase CE18177 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04674 Hypothetical protein T02G6.6 [Caenorhabditis elegans] ref|NP_493004.1| T02G6.6 [Caenorhabditis elegans] 0.0
blast CAB04674 Hypothetical protein T02G6.6 [Caenorhabditis elegans] ref|NP_493004.1| T02G6.6 [Caenorhabditis elegans] 1.0E-140
Sequence
Target Sequence 
>C. ELEGANS:178313_AT
ggattatgagttacgcctggagtgttcaaaaaactttgatttgtcacatttttttgtatg
gaatttcaccactcatttttcttttgtagagtttagcccgacaaatggagaagacttcca
taagctgacttttctacaaaaccgtgtcaccactgatattctccaactgagtcagtataa
aattgataatgtataccacagaaaacaaatccaactacctgttttaacgcaaagctgtgt
gaaaattagtttaatgaattttggagaaatatcgaatctattcaaaatggaagtcaaaag
attggaggtatacaaaaattgttccataacttgcaaaaaaatcaacgaacttttcaaaca
ctggataagtggtggaatggagcatctggaagtgttcaccgccgatcaaggattttatga
tactcacaagcttttagaaggaatcgagatggttgatctaagctcacacagacctgcaca
cccggattcggattttatgtctatgtgtgaaacgaagaaatgtgatattcaaagatcagt
ggatggaagacgggcaaccatatttcgagactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATTATGAGTTACGCCTGGAGTGT 383 509 588 Antisense
ATTTCACCACTCATTTTTCTTTTGT 141 17 650 Antisense
GTAGAGTTTAGCCCGACAAATGGAG 308 457 673 Antisense
GACTTCCATAAGCTGACTTTTCTAC 58 371 700 Antisense
TTTCTACAAAACCGTGTCACCACTG 25 673 718 Antisense
TCACCACTGATATTCTCCAACTGAG 132 625 734 Antisense
TCCAACTACCTGTTTTAACGCAAAG 261 585 797 Antisense
AAGTGTTCACCGCCGATCAAGGATT 356 159 977 Antisense
TGATCTAAGCTCACACAGACCTGCA 502 565 1041 Antisense
ACCTGCACACCCGGATTCGGATTTT 89 89 1059 Antisense
GACGGGCAACCATATTTCGAGACTG 466 377 1136 Antisense
Sequence Source Affymetrix Proprietary Database