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[178311_at] 7TM chemoreceptor, srw family

Description T10H4.8 /REP_DB=WormBase Gene ID /WP=CE16393 /TR=O45778 /GB=CAB03337.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 10      6grp_cgc > 54      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 2.1
(-3)
A 		4.3
(-2.6)
A 		8.8
(-1.9)
A 		38.3
(3)
A 		36
B 5.1
(-2.1)
A 		4.4
(-2.5)
A 		13.4
(3)
A 		3.6
(-3)
A 		10
C 11
(-2.1)
A 		20
(-1.2)
A 		2.1
(-3)
A 		60.8
(3)
A 		59
avr 6.1
(-3) 		9.6
(-2.3) 		8.1
(-2.6) 		34.2
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 6
(-2.1)
A 		7.6
(-1.4)
A 		14.5
(1.4)
A 		3.7
(-3)
A 		18.5
(3)
A 		6.6
(-1.8)
A 		15
B 10.2
(-0.8)
A 		25.9
(3)
A 		17.8
(1)
A 		1.3
(-3)
A 		13.8
(0)
A 		3.2
(-2.5)
A 		25
C 0.9
(-3)
A 		13.4
(3)
A 		1.1
(-2.9)
A 		6.3
(-0.4)
A 		2.4
(-2.3)
A 		3.4
(-1.8)
A 		13
avr 5.7
(-2) 		15.6
(3) 		11.1
(0.7) 		3.8
(-3) 		11.6
(1) 		4.4
(-2.7) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 0.8
(-3)
A 		0.9
(-2.9)
A 		2.3
(-1.1)
A 		5.6
(3)
A 		5
B 1.6
(-0.9)
A 		1.1
(-2.2)
A 		3.1
(3)
A 		0.8
(-3)
A 		2
C 3.7
(-1.1)
A 		5.7
(0.1)
A 		0.7
(-3)
A 		10.3
(3)
A 		10
avr 2
(-3) 		2.6
(-2) 		2
(-3) 		5.6
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 1.1
(-2.7)
A 		2.7
(-0.7)
A 		3.2
(-0.1)
A 		0.9
(-3)
A 		5.6
(3)
A 		1.6
(-2.1)
A 		5
B 3.5
(-0.7)
A 		8.6
(3)
A 		4.3
(-0.1)
A 		0.4
(-3)
A 		5.6
(0.8)
A 		1.2
(-2.4)
A 		8
C 0.3
(-3)
A 		4.1
(3)
A 		0.3
(-3)
A 		1.3
(-1.4)
A 		0.8
(-2.2)
A 		1.1
(-1.7)
A 		4
avr 1.6
(-2) 		5.1
(3) 		2.6
(-0.6) 		0.9
(-3) 		4
(1.4) 		1.3
(-2.4) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178311_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13770
Sequence Type Exemplar sequence
Representative Public ID T10H4.8 NCBI
Target Description T10H4.8 /REP_DB=WormBase Gene ID /WP=CE16393 /TR=O45778 /GB=CAB03337.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074384(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074384 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-19) (srw-19) mRNA, complete cds. 11/11 None
T10H4.8 ENSEMBL cdna:known chromosome:CEL140:V:15282368:15283963:-1 gene:T10H4.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030479 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15283372-15283963(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-19
Ensembl T10H4.8
Entrez Gene 188397 Entrez gene
SwissProt O45778 EMBL-EBI
WormBase CE33827 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03337 Hypothetical protein T10H4.8 [Caenorhabditis elegans] ref|NP_506785.2| Serpentine Receptor, class W family member (srw-19) [Caenorhabditis elegans] 0.0
blast CAB03333 Hypothetical protein T10H4.6 [Caenorhabditis elegans] ref|NP_506783.1| Serpentine Receptor, class W family member (srw-17) [Caenorhabditis elegans] 1.0E-126
blast CAB03335 Hypothetical protein T10H4.5 [Caenorhabditis elegans] ref|NP_506782.2| Serpentine Receptor, class W family member (srw-16) [Caenorhabditis elegans] 1.0E-116
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506785.2 6 31-53,63-85,118-140,162-184,231-253,275-297
T10H4.8 6 31-53,63-85,118-140,162-184,231-253,275-297
Sequence
Target Sequence 
>C. ELEGANS:178311_AT
atgtccgagaattactttcaccctgaaacttgtgaaaatataggcttattcagtaatctt
aactgtggggatatctataagaaattgggtctgttatttgcggacattaacgtttgccta
caatttttcacagttttcataaatattttacatttgatcgttttatttcaaaaagagcta
cgaacaggtgcaatttatattctgatgattggaatttgtattgctgatattcttggttat
ttgcttgatttttacaacgttatgattgaaagaacttggattagatggatttcgttttat
tcaaacatcgattgcctgcggaaagatttaacttatgtcgatgttgtggattttatttac
atatttgtgtttatggcacgacctgttgctgtttggctggcgatgctgatggcgttgata
agaactttatctgtattttttccgatgagcaattggattcaaaagctttcaaaaccaaaa
aatgcaatttttatgattgttgtagtgttcacattttggacaatatggcattcatgtcag
ttctttgctatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTCCGAGAATTACTTTCACCCTG 319 49 13 Antisense
AATTGGGTCTGTTATTTGCGGACAT 405 179 95 Antisense
TTGCGGACATTAACGTTTGCCTACA 504 701 110 Antisense
TGCCTACAATTTTTCACAGTTTTCA 181 587 127 Antisense
GATATTCTTGGTTATTTGCTTGATT 449 427 238 Antisense
ATTCAAACATCGATTGCCTGCGGAA 263 11 311 Antisense
GTTTATGGCACGACCTGTTGCTGTT 617 449 381 Antisense
TTGCTGTTTGGCTGGCGATGCTGAT 674 701 398 Antisense
GCTGGCGATGCTGATGGCGTTGATA 214 295 408 Antisense
GAACTTTATCTGTATTTTTTCCGAT 660 349 434 Antisense
GCATTCATGTCAGTTCTTTGCTATG 70 309 540 Antisense
Sequence Source Affymetrix Proprietary Database