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[178310_at]

Description F46A8.1 /REP_DB=WormBase Gene ID /WP=CE10558 /TR=O01334 /GB=CAB04394.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 44      6grp_total > 20      4grp_total > 47      6grp_high1_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 198
1 2 3 4 range
A 200.4
(3)
P 		70
(-1)
A 		53.1
(-1.5)
A 		5.1
(-3)
A 		195
B 180.9
(3)
P 		9
(-2.9)
A 		13.6
(-2.7)
A 		4.6
(-3)
A 		176
C 199.9
(3)
P 		13.8
(-2.7)
A 		11
(-2.8)
A 		2.8
(-3)
A 		197
avr 193.7
(3) 		30.9
(-2.2) 		25.9
(-2.3) 		4.2
(-3) 		190

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 122
1 2 3 4 5 6 range
A 81.8
(0.2)
A 		129.7
(3)
P 		113.4
(2.1)
P 		125.1
(2.7)
P 		25.3
(-3)
A 		73.1
(-0.3)
P 		104
B 75.2
(0.7)
P 		109.2
(3)
P 		55.4
(-0.7)
P 		21.9
(-3)
A 		74.1
(0.6)
P 		98.5
(2.3)
P 		87
C 107.8
(0.4)
P 		143.4
(3)
P 		137.8
(2.6)
P 		115.8
(1)
P 		61
(-3)
P 		71.1
(-2.3)
P 		82
avr 88.3
(-0.2) 		127.4
(3) 		102.2
(1) 		87.6
(-0.2) 		53.5
(-3) 		80.9
(-0.8) 		74
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 73
(3)
P 		15.2
(-1.8)
A 		13.9
(-1.9)
A 		0.8
(-3)
A 		72
B 57.7
(3)
P 		2.2
(-2.9)
A 		3.2
(-2.8)
A 		1
(-3)
A 		57
C 66.2
(3)
P 		4
(-2.7)
A 		3.8
(-2.7)
A 		0.5
(-3)
A 		66
avr 65.6
(3) 		7.1
(-2.4) 		7
(-2.4) 		0.8
(-3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 15.1
(-1.8)
A 		46.1
(3)
P 		24.7
(-0.3)
P 		31.7
(0.8)
P 		7.6
(-3)
A 		17.8
(-1.4)
P 		39
B 26.2
(1)
P 		36.3
(2.9)
P 		13.5
(-1.5)
P 		5.8
(-3)
A 		30.1
(1.7)
P 		36.7
(3)
P 		31
C 39.9
(2.1)
P 		43.7
(3)
P 		35.1
(0.9)
P 		23.3
(-2.1)
P 		19.7
(-3)
P 		23.8
(-2)
P 		24
avr 27.1
(-0.9) 		42
(3) 		24.4
(-1.6) 		20.3
(-2.7) 		19.1
(-3) 		26.1
(-1.2) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178310_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.788
Sequence Type Exemplar sequence
Representative Public ID F46A8.1 NCBI
Target Description F46A8.1 /REP_DB=WormBase Gene ID /WP=CE10558 /TR=O01334 /GB=CAB04394.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F46A8.1 ENSEMBL cdna:pseudogene chromosome:CEL140:I:11258263:11259726:1 gene:F46A8.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000031228 6/11 Cross Hyb Matching Probes None
SNAP00000031225 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11257559-11259657(+) 100.0 100.0
Public Domain and Genome References
Ensembl F46A8.1
Sequence
Target Sequence 
>C. ELEGANS:178310_AT
aagacacttttatttgcgtattcaattgatttggaggccagtgttgtttcggaatcggcc
agtaccctgtttggaaacttggactactataatttttacgacaaatctctattctctgtt
tgtggatctgtagttgtgattctctcgaaacgaaacccaaatgaagtggaaattaccaat
caagtagccaaaattcgatctcatcatggaatagttcatgtaattgcatcaaatactcca
tcagatggatcccaaccacttaccctctatgacctctcatctaaaacaaatggactgact
gattttcgaaatgatgatcaattctacaattctgcaattgatttttacggcttaaatcga
cctatagctttttacgcggtaaaccctgtagtgtctggaaaaggttctattgtactgcct
ccactattccacactcaacgcgagggagctgcctttgcagttactaaaaatggcacaatt
cgaacaggtggtgatattcttaatgctgctatctacaatatgactttggaatactcatac
tcggacaataccccattcaaaatgcagattagagcatacacttacatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGACACTTTTATTTGCGTATTCAA 182 153 289 Antisense
GTGTTGTTTCGGAATCGGCCAGTAC 701 483 329 Antisense
GGCCAGTACCCTGTTTGGAAACTTG 177 503 345 Antisense
TACGACAAATCTCTATTCTCTGTTT 176 649 385 Antisense
AATCGACCTATAGCTTTTTACGCGG 541 165 643 Antisense
ACGCGGTAAACCCTGTAGTGTCTGG 481 91 662 Antisense
AAAGGTTCTATTGTACTGCCTCCAC 169 121 688 Antisense
TATTCCACACTCAACGCGAGGGAGC 132 663 713 Antisense
GCGAGGGAGCTGCCTTTGCAGTTAC 135 289 728 Antisense
AGGTGGTGATATTCTTAATGCTGCT 610 57 774 Antisense
GCAGATTAGAGCATACACTTACATG 282 313 852 Antisense
Sequence Source Affymetrix Proprietary Database