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[178309_at]

Description E03H4.3 /REP_DB=WormBase Gene ID /WP=CE09130 /TR=O17747 /GB=CAB04029.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 4.9
(-3)
A 		17.9
(-2.2)
A 		19.8
(-2.1)
A 		99.4
(3)
P 		95
B 38.2
(3)
A 		38.2
(3)
A 		25.2
(-3)
A 		32.5
(0.4)
P 		13
C 34
(-3)
A 		77.1
(-0.3)
A 		35.8
(-2.9)
A 		130.4
(3)
P 		96
avr 25.7
(-3) 		44.4
(-1.2) 		26.9
(-2.9) 		87.4
(3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 15.2
(-0.2)
A 		3.2
(-2.7)
A 		27.3
(2.4)
A 		1.8
(-3)
A 		5.5
(-2.2)
A 		30.2
(3)
A 		28
B 30.8
(2.4)
A 		24.1
(1.2)
A 		34
(3)
A 		1.9
(-2.9)
A 		32.7
(2.8)
P 		1.1
(-3)
A 		33
C 18.6
(2)
A 		21.7
(2.9)
A 		1.6
(-3)
A 		5.5
(-1.9)
A 		14.6
(0.8)
A 		22.1
(3)
A 		21
avr 21.5
(3) 		16.3
(1.3) 		21
(2.8) 		3.1
(-3) 		17.6
(1.7) 		17.8
(1.8) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 1.8
(-3)
A 		3.9
(-2)
A 		5.2
(-1.4)
A 		14.5
(3)
P 		13
B 12.2
(3)
A 		9.4
(0.4)
A 		5.8
(-3)
A 		6.9
(-2)
P 		6
C 11.2
(-3)
A 		22.2
(3)
A 		12.5
(-2.3)
A 		22
(2.9)
P 		11
avr 8.4
(-2.5) 		11.8
(0.6) 		7.8
(-3) 		14.5
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 2.8
(-1)
A 		1.2
(-2.4)
A 		6
(1.8)
A 		0.5
(-3)
A 		1.7
(-2)
A 		7.4
(3)
A 		7
B 10.7
(1.8)
A 		8
(0.5)
A 		8.3
(0.7)
A 		0.5
(-3)
A 		13.3
(3)
P 		0.4
(-3)
A 		13
C 6.9
(2.6)
A 		6.6
(2.3)
A 		0.4
(-3)
A 		1.1
(-2.4)
A 		4.7
(0.7)
A 		7.4
(3)
A 		7
avr 6.8
(3) 		5.3
(1.5) 		4.9
(1.1) 		0.7
(-3) 		6.6
(2.8) 		5.1
(1.3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178309_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2382
Sequence Type Exemplar sequence
Representative Public ID E03H4.3 NCBI
Target Description E03H4.3 /REP_DB=WormBase Gene ID /WP=CE09130 /TR=O17747 /GB=CAB04029.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060745(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060745 NCBI Caenorhabditis elegans E03H4.3 (E03H4.3) mRNA, complete cds. 11/11 None
SNAP00000031036 ENSEMBL cdna:SNAP chromosome:CEL140:I:12413646:12415067:-1 11/11 None
GENEFINDER00000031057 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12413646:12414913:-1 11/11 None
E03H4.3 ENSEMBL cdna:known chromosome:CEL140:I:12414076:12415067:-1 gene:E03H4.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12414006-12414998(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl E03H4.3
Entrez Gene 184018 Entrez gene
SwissProt O17747 EMBL-EBI
WormBase CE09130 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6486 protein amino acid glycosylation inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8378 galactosyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04029 Hypothetical protein E03H4.3 [Caenorhabditis elegans] ref|NP_493146.1| E03H4.3 [Caenorhabditis elegans] 1.0E-158
blast CAB04029 Hypothetical protein E03H4.3 [Caenorhabditis elegans] ref|NP_493146.1| E03H4.3 [Caenorhabditis elegans] 1.0E-142
blast CAB04029 Hypothetical protein E03H4.3 [Caenorhabditis elegans] ref|NP_493146.1| E03H4.3 [Caenorhabditis elegans] 1.0E-138
blast CAB03539 Hypothetical protein T09E11.6 [Caenorhabditis elegans] ref|NP_493130.1| T09E11.6 [Caenorhabditis elegans] 1.0E-127
blast CAB03539 Hypothetical protein T09E11.6 [Caenorhabditis elegans] ref|NP_493130.1| T09E11.6 [Caenorhabditis elegans] 1.0E-126
blast CAB04490 Hypothetical protein F56H6.1 [Caenorhabditis elegans] ref|NP_493101.1| F56H6.1 [Caenorhabditis elegans] 1.0E-126
blast CAB04490 Hypothetical protein F56H6.1 [Caenorhabditis elegans] ref|NP_493101.1| F56H6.1 [Caenorhabditis elegans] 1.0E-124
Sequence
Target Sequence 
>C. ELEGANS:178309_AT
actctgaggctaccaaactctggacaaatattctgctttgttgagacttctgaacgttac
tataatgaccgtgttccttccatagcagctacgtggctgcggagatgtgacaacgggcgg
ttcttctcaaaaactccgcttccgagcgccaacatgacgtattccacggtttataaaaat
ctagaagactcatttttcgatttgtttcgaaaatccatatttggattctactactcttat
atgcacatttcaaactcctttgattggtacttaaaggcagatgatgatacatattttgca
atggatcacttgagggagtacctgaacactttagacccttcgaagccattatatctagga
tacgtgataaaatctggtcttaaaaacggttacaactccggtggagccggttatatcctt
tccaacgctgcagtgaagatttttgtggagaaattgtaccacgatgagtacgggtgtcct
tatgattgggcagaggatcgtggaatgggaaggtgtctggcaagagtgggaatctatcca
actgacaccagagatgacaagggattcaatcggttcatgccgtataggccgagtga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTCTGAGGCTACCAAACTCTGGAC 450 97 223 Antisense
GAGACTTCTGAACGTTACTATAATG 516 393 265 Antisense
TACTATAATGACCGTGTTCCTTCCA 472 643 280 Antisense
GTTCCTTCCATAGCAGCTACGTGGC 361 439 295 Antisense
TCCGAGCGCCAACATGACGTATTCC 507 595 363 Antisense
TCCATATTTGGATTCTACTACTCTT 475 591 436 Antisense
TGGAGCCGGTTATATCCTTTCCAAC 629 545 624 Antisense
GATGAGTACGGGTGTCCTTATGATT 428 391 685 Antisense
GGAATCTATCCAACTGACACCAGAG 556 533 751 Antisense
CAAGGGATTCAATCGGTTCATGCCG 31 185 780 Antisense
GGTTCATGCCGTATAGGCCGAGTGA 227 507 794 Antisense
Sequence Source Affymetrix Proprietary Database