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[178308_at]

Description F47G4.5 /REP_DB=WormBase Gene ID /WP=CE18703 /TR=Q9XTS3 /GB=CAB16311.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 31      4grp_total > 28      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 71.6
(2.3)
A 		59.6
(-0.1)
A 		45.2
(-3)
A 		75.2
(3)
A 		30
B 30
(-3)
A 		102.5
(3)
A 		74.4
(0.7)
A 		53
(-1.1)
A 		73
C 116.2
(2.2)
A 		69.6
(-0.8)
A 		35.6
(-3)
A 		128.6
(3)
A 		93
avr 72.6
(0.7) 		77.2
(1.5) 		51.7
(-3) 		85.6
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 64.5
(2.2)
A 		67.3
(2.5)
A 		49.5
(0.6)
A 		71.8
(3)
A 		18.9
(-2.8)
A 		16.7
(-3)
A 		55
B 57.8
(-0.7)
A 		85.3
(0.9)
A 		119.3
(3)
A 		47.2
(-1.4)
A 		32.9
(-2.3)
A 		20.6
(-3)
A 		99
C 67
(1.6)
A 		68.4
(1.8)
A 		72.8
(2.2)
A 		79.8
(3)
A 		54.3
(0.2)
A 		24.5
(-3)
A 		55
avr 63.1
(1.3) 		73.7
(2.3) 		80.5
(3) 		66.3
(1.6) 		35.4
(-1.5) 		20.6
(-3) 		60
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 26.1
(3)
A 		12.9
(-2.2)
A 		11.8
(-2.7)
A 		11
(-3)
A 		15
B 9.6
(-3)
A 		25.3
(3)
A 		17.2
(-0.1)
A 		11.3
(-2.4)
A 		16
C 38.5
(3)
A 		20
(-1.3)
A 		12.4
(-3)
A 		21.7
(-0.9)
A 		26
avr 24.7
(3) 		19.4
(0.1) 		13.8
(-3) 		14.7
(-2.5) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 11.9
(-0.6)
A 		23.9
(3)
A 		10.8
(-1)
A 		18.2
(1.3)
A 		5.7
(-2.5)
A 		4.1
(-3)
A 		20
B 20.1
(0.5)
A 		28.4
(2.8)
A 		29
(3)
A 		12.5
(-1.6)
A 		13.4
(-1.4)
A 		7.7
(-3)
A 		21
C 24.8
(3)
A 		20.9
(1.6)
A 		18.5
(0.7)
A 		16.1
(-0.1)
A 		17.6
(0.4)
A 		8.2
(-3)
A 		17
avr 18.9
(1.1) 		24.4
(3) 		19.4
(1.3) 		15.6
(0) 		12.2
(-1.1) 		6.7
(-3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178308_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2205
Sequence Type Exemplar sequence
Representative Public ID F47G4.5 NCBI
Target Description F47G4.5 /REP_DB=WormBase Gene ID /WP=CE18703 /TR=Q9XTS3 /GB=CAB16311.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061051(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061051 NCBI Caenorhabditis elegans F47G4.5 (F47G4.5) mRNA, complete cds. 11/11 None
SNAP00000012291 ENSEMBL cdna:SNAP chromosome:CEL140:I:14067170:14070230:-1 11/11 None
GENEFINDER00000012303 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14068994:14070540:-1 11/11 None
F47G4.5 ENSEMBL cdna:known chromosome:CEL140:I:14068994:14070255:-1 gene:F47G4.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14068924-14070161(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F47G4.5
Entrez Gene 173270 Entrez gene
SwissProt Q9XTS3 EMBL-EBI
WormBase CE18703 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB16311 Hypothetical protein F47G4.5 [Caenorhabditis elegans] ref|NP_493452.1| F47G4.5 [Caenorhabditis elegans] 1.0E-147
blast CAB16311 Hypothetical protein F47G4.5 [Caenorhabditis elegans] ref|NP_493452.1| F47G4.5 [Caenorhabditis elegans] 1.0E-146
blast CAB16311 Hypothetical protein F47G4.5 [Caenorhabditis elegans] ref|NP_493452.1| F47G4.5 [Caenorhabditis elegans] 1.0E-138
blast CAB16313 Hypothetical protein F47G4.4 [Caenorhabditis elegans] ref|NP_493453.1| F47G4.4 [Caenorhabditis elegans] 6.0E-59
blast CAB16313 Hypothetical protein F47G4.4 [Caenorhabditis elegans] ref|NP_493453.1| F47G4.4 [Caenorhabditis elegans] 8.0E-59
blast CAE71828 Hypothetical protein CBG18869 [Caenorhabditis briggsae] 7.0E-57
blast CAE71828 Hypothetical protein CBG18869 [Caenorhabditis briggsae] 9.0E-57
Sequence
Target Sequence 
>C. ELEGANS:178308_AT
gaagaaacttccacagtctgcatcaaatccgagcttcctgaggaagcaggggagctcctc
gtcgctgtcgaatgggttatggacagattgtatagaggttgtgaatgagatcggggtgat
ggcgaagatggagagtaggaagatacgtcgcctacgaatggctgtatatcgtcgagtccg
aatttccgacgacgaggagatggttctcaccgcctcccgggcgttgagcaagtgtcatgg
ctggacactagacacttgtcatgactacctacccgttattatagataatattatcagcat
ggacacttcgaaccggattatcgcggcagagggtctggcggcgatcgcagactcgctagg
ggagaggctcgtgaagttcgctggtatgaactcccacaggattggggtggatatagcggc
tgaggagaggtccgagaaggcgaaggcttgtattcagcttctccgctcagtggtgaggaa
acgcgactggtactatcgacatctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGAAACTTCCACAGTCTGCATCA 525 339 294 Antisense
TGCATCAAATCCGAGCTTCCTGAGG 556 577 312 Antisense
CTCCTCGTCGCTGTCGAATGGGTTA 670 233 348 Antisense
GAATGGCTGTATATCGTCGAGTCCG 533 333 449 Antisense
TCGAGTCCGAATTTCCGACGACGAG 75 601 465 Antisense
TCATGACTACCTACCCGTTATTATA 73 623 552 Antisense
ATCAGCATGGACACTTCGAACCGGA 82 29 586 Antisense
TCGCGGCAGAGGGTCTGGCGGCGAT 148 595 614 Antisense
TTCGCTGGTATGAACTCCCACAGGA 700 681 670 Antisense
GAAGGCTTGTATTCAGCTTCTCCGC 650 333 735 Antisense
ACGCGACTGGTACTATCGACATCTG 532 89 774 Antisense
Sequence Source Affymetrix Proprietary Database