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[178307_at]

Description C08B6.3 /REP_DB=WormBase Gene ID /WP=CE05240 /TR=Q17815 /GB=CAA96586.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 72      4grp_total > 31      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 190
1 2 3 4 range
A 272.8
(3)
A 		121.5
(-3)
A 		250.5
(2.1)
A 		261.8
(2.6)
A 		151
B 311.9
(3)
A 		123.5
(-3)
A 		174.9
(-1.4)
A 		231
(0.4)
A 		188
C 243.5
(3)
A 		207.4
(0.2)
A 		178.8
(-2.1)
A 		166.8
(-3)
A 		77
avr 276.1
(3) 		150.8
(-3) 		201.4
(-0.6) 		219.9
(0.3) 		125

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 364
1 2 3 4 5 6 range
A 192.1
(-2.2)
A 		245.5
(-0.8)
A 		364.3
(2.5)
P 		382.5
(3)
M 		366.3
(2.6)
P 		163.6
(-3)
A 		219
B 152.2
(-3)
A 		376.5
(1.4)
A 		455.7
(3)
P 		417.7
(2.2)
M 		432.7
(2.5)
P 		228.5
(-1.5)
A 		304
C 152.1
(-3)
A 		398.6
(1.1)
P 		371.3
(0.6)
A 		515.8
(3)
A 		289.2
(-0.7)
P 		281
(-0.9)
M 		364
avr 165.5
(-3) 		340.2
(0.8) 		397.1
(2.1) 		438.7
(3) 		362.7
(1.3) 		224.4
(-1.7) 		273
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 99.3
(3)
A 		26.4
(-3)
A 		65.5
(0.2)
A 		38.3
(-2)
A 		73
B 99.5
(3)
A 		30.5
(-3)
A 		40.5
(-2.1)
A 		49.2
(-1.4)
A 		69
C 80.6
(3)
A 		59.6
(0.6)
A 		62.3
(0.9)
A 		28.1
(-3)
A 		53
avr 93.1
(3) 		38.8
(-3) 		56.1
(-1.1) 		38.5
(-3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 140
1 2 3 4 5 6 range
A 35.4
(-3)
A 		87.3
(1.1)
A 		79.3
(0.5)
P 		97
(1.9)
M 		110.5
(3)
P 		39.8
(-2.6)
A 		75
B 53
(-3)
A 		125.3
(0.5)
A 		110.7
(-0.2)
P 		110.6
(-0.2)
M 		175.8
(3)
P 		85.2
(-1.4)
A 		123
C 56.4
(-3)
A 		121.6
(3)
P 		94.5
(0.5)
A 		103.7
(1.4)
A 		93.6
(0.4)
P 		94.1
(0.5)
M 		65
avr 48.3
(-3) 		111.4
(1.8) 		94.8
(0.6) 		103.8
(1.3) 		126.6
(3) 		73
(-1.1) 		78
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178307_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12257
Sequence Type Exemplar sequence
Representative Public ID C08B6.3 NCBI
Target Description C08B6.3 /REP_DB=WormBase Gene ID /WP=CE05240 /TR=Q17815 /GB=CAA96586.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073198(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073198 NCBI Caenorhabditis elegans C08B6.3 (C08B6.3) mRNA, complete cds. 11/11 None
SNAP00000004948 ENSEMBL cdna:SNAP chromosome:CEL140:V:10112617:10114596:-1 11/11 None
GENEFINDER00000004965 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10112617:10114868:-1 11/11 None
C08B6.3 ENSEMBL cdna:known chromosome:CEL140:V:10112617:10115532:-1 gene:C08B6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10112616-10115532(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C08B6.3
Entrez Gene 182389 Entrez gene
SwissProt Q17815 EMBL-EBI
WormBase CE05240 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA96586 Hypothetical protein C08B6.3 [Caenorhabditis elegans] ref|NP_505599.1| C08B6.3 [Caenorhabditis elegans] 0.0
blast CAE64732 Hypothetical protein CBG09519 [Caenorhabditis briggsae] 0.0
blast AAC78186 Hypothetical protein F46F5.7 [Caenorhabditis elegans] ref|NP_493820.1| F46F5.7 [Caenorhabditis elegans] 1.0E-110
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.1E-126
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 9.4E-120
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.1E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505599.1 1 66-83
C08B6.3 1 66-83
GENEFINDER00000004965 1 5-24
Sequence
Target Sequence 
>C. ELEGANS:178307_AT
gtacgttgcgaagtcgttttgaatccaaatggagtctcttctcggacatagatgaacgac
ttttaatgacaaagtatccaggaacaattctcgattatttaaaagaagttaatgatccta
aaattgctggagttcaatacaggcaacaatggatcatgaaaacagaattcatgccagata
aatatgaaggagataaacagattgacgaatggtctcccacactgcgttggcacaattcat
ctgttttcgggcctccaggacatacagtaaaatgcataattatgcctgaaaaagttttcg
ccatgtggacccatcgtccgactatgatatttccaggattttatgttcacgagttgacac
cagaagaaggaattatccggcactacagggatcttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACGTTGCGAAGTCGTTTTGAATC 243 459 953 Antisense
GAATCCAAATGGAGTCTCTTCTCGG 515 329 973 Antisense
GGAGTCTCTTCTCGGACATAGATGA 456 517 983 Antisense
AGATTGACGAATGGTCTCCCACACT 285 65 1151 Antisense
TCCCACACTGCGTTGGCACAATTCA 627 597 1167 Antisense
GCACAATTCATCTGTTTTCGGGCCT 403 317 1182 Antisense
TTCGGGCCTCCAGGACATACAGTAA 22 695 1198 Antisense
AAAAGTTTTCGCCATGTGGACCCAT 382 131 1242 Antisense
GACCCATCGTCCGACTATGATATTT 640 381 1260 Antisense
TTATGTTCACGAGTTGACACCAGAA 609 677 1293 Antisense
TTATCCGGCACTACAGGGATCTTCA 674 675 1325 Antisense
Sequence Source Affymetrix Proprietary Database