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[178305_at]

Description ZK899.7 /REP_DB=WormBase Gene ID /WP=CE15469 /TR=O18306 /GB=CAA85501.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 11      6grp_total > 23      4grp_total > 13      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 173
1 2 3 4 range
A 101
(1.4)
P 		33.4
(-2.6)
A 		26.4
(-3)
A 		127.5
(3)
P 		101
B 97.4
(0.5)
P 		47.4
(-3)
A 		53.2
(-2.6)
A 		132.1
(3)
P 		85
C 111.7
(-0.1)
P 		26.9
(-3)
A 		36.9
(-2.7)
P 		199.5
(3)
P 		173
avr 103.4
(0.5) 		35.9
(-3) 		38.8
(-2.9) 		153
(3) 		117

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 135
1 2 3 4 5 6 range
A 169.7
(3)
P 		114.7
(0.6)
P 		149.8
(2.1)
P 		80.4
(-1)
P 		67.5
(-1.5)
P 		34.6
(-3)
A 		135
B 151
(3)
P 		123.8
(1.6)
P 		132.6
(2)
P 		88.6
(-0.3)
P 		89.4
(-0.3)
P 		37.9
(-3)
P 		113
C 130
(2.2)
P 		127
(2)
P 		59.9
(-1.6)
P 		145.4
(3)
P 		34.5
(-3)
A 		53.4
(-2)
M 		111
avr 150.2
(3) 		121.8
(1.4) 		114.1
(1) 		104.8
(0.5) 		63.8
(-1.8) 		42
(-3) 		108
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 36.8
(3)
P 		7.2
(-2.9)
A 		6.9
(-3)
A 		18.7
(-0.6)
P 		30
B 31.1
(3)
P 		11.7
(-3)
A 		12.3
(-2.8)
A 		28.1
(2.1)
P 		19
C 37
(3)
P 		7.7
(-3)
A 		12.8
(-2)
P 		33.6
(2.3)
P 		29
avr 35
(3) 		8.9
(-3) 		10.7
(-2.6) 		26.8
(1.1) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 31.3
(1.2)
P 		40.8
(3)
P 		32.6
(1.5)
P 		20.4
(-0.8)
P 		20.4
(-0.8)
P 		8.4
(-3)
A 		32
B 52.6
(3)
P 		41.2
(1.2)
P 		32.2
(-0.2)
P 		23.5
(-1.5)
P 		36.3
(0.5)
P 		14.1
(-3)
P 		39
C 48.2
(3)
P 		38.7
(1.5)
P 		15.2
(-2.4)
P 		29.2
(-0.1)
P 		11.2
(-3)
A 		17.9
(-1.9)
M 		37
avr 44
(3) 		40.2
(2.3) 		26.7
(-0.4) 		24.4
(-0.9) 		22.6
(-1.2) 		13.5
(-3) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178305_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16329
Sequence Type Exemplar sequence
Representative Public ID ZK899.7 NCBI
Target Description ZK899.7 /REP_DB=WormBase Gene ID /WP=CE15469 /TR=O18306 /GB=CAA85501.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077187(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077187 NCBI Caenorhabditis elegans ZK899.7 (ZK899.7) mRNA, complete cds. 11/11 None
SNAP00000025035 ENSEMBL cdna:SNAP chromosome:CEL140:X:9447791:9449329:-1 11/11 None
GENEFINDER00000025057 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9447791:9451922:-1 11/11 None
ZK899.7 ENSEMBL cdna:known chromosome:CEL140:X:9447791:9449329:-1 gene:ZK899.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9447790-9449329(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK899.7
Entrez Gene 191458 Entrez gene
SwissProt O18306 EMBL-EBI
WormBase CE15469 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA85502 Hypothetical protein ZK899.2 [Caenorhabditis elegans] ref|NP_509589.1| ZK899.2 [Caenorhabditis elegans] 0.0
blast CAE69817 Hypothetical protein CBG16133 [Caenorhabditis briggsae] 0.0
blast CAA85501 Hypothetical protein ZK899.7 [Caenorhabditis elegans] ref|NP_509588.1| ZK899.7 [Caenorhabditis elegans] 4.0E-99
blast CAA85501 Hypothetical protein ZK899.7 [Caenorhabditis elegans] ref|NP_509588.1| ZK899.7 [Caenorhabditis elegans] 5.0E-88
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000025057 9 55-74,81-103,107-129,149-171,191-213,232-254,264-283,303-320,405-427
Sequence
Target Sequence 
>C. ELEGANS:178305_AT
atggagatgcttcacagtgctgtggagcgaatggatgcatttgcagagaagtatatggct
gttagaagcaagttgacattaggattaattgttatgtgggcgttcgactacttcgggaaa
ctttttgattcctacatcaaacgcatctgcggaatcaggcatggagctgtgttttacttt
cctcggcgatggttagaagatgatgacgaagtattcgatgaaatagcggagaactttgaa
ttggatgactcttcaatagatgaacaaaatcaaacaattaatgccaaaacagatcacatg
gaagaatttgaagaatctctggaggactgggaattcgcttcgtttgataatatggatgat
tatgaaactgactcagatgatgagaataagtacattattgaaaaaatgcgcagtcgttac
agggctgcgttgacagatcctcaacacattgctgcttacagagccaacgaagtgaagcga
atttccaatgaaattcaatgtgatgagattttgttggaaaacgggctcattgatccaaca
g

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGAGATGCTTCACAGTGCTGTGG 69 53 13 Antisense
GTTATGTGGGCGTTCGACTACTTCG 282 447 103 Antisense
TTCCTACATCAAACGCATCTGCGGA 164 701 141 Antisense
GCATCTGCGGAATCAGGCATGGAGC 449 309 155 Antisense
ATGGAGCTGTGTTTTACTTTCCTCG 180 53 173 Antisense
TTTACTTTCCTCGGCGATGGTTAGA 335 673 185 Antisense
AGGACTGGGAATTCGCTTCGTTTGA 204 55 335 Antisense
AAATGCGCAGTCGTTACAGGGCTGC 397 119 416 Antisense
TACAGGGCTGCGTTGACAGATCCTC 43 645 430 Antisense
ATCCTCAACACATTGCTGCTTACAG 488 39 449 Antisense
GAAAACGGGCTCATTGATCCAACAG 321 353 529 Antisense
Sequence Source Affymetrix Proprietary Database