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[178304_at]

Description K08D8.1 /REP_DB=WormBase Gene ID /WP=CE06140 /TR=Q21331 /GB=CAA97436.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 33      6grp_total > 20      4grp_total > 01      6grp_high1_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 24.7
(-3)
P 		47.9
(1.8)
A 		53.6
(3)
A 		51
(2.5)
M 		29
B 37.6
(3)
A 		10.5
(-3)
A 		25.2
(0.3)
A 		31
(1.5)
A 		27
C 34.4
(-1.7)
A 		21.9
(-3)
A 		23.3
(-2.9)
A 		80.2
(3)
P 		58
avr 32.2
(-1.8) 		26.8
(-3) 		34
(-1.4) 		54.1
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 99
1 2 3 4 5 6 range
A 81.5
(3)
P 		39.2
(-2.4)
M 		80.9
(2.9)
P 		53.1
(-0.6)
P 		66.2
(1)
P 		34.8
(-3)
A 		47
B 27.7
(-3)
A 		105.3
(3)
P 		93.1
(2.1)
P 		56.7
(-0.8)
P 		82.5
(1.2)
P 		41.3
(-1.9)
P 		78
C 58.9
(-0.8)
P 		121.7
(3)
P 		61.2
(-0.7)
P 		118.6
(2.8)
P 		33.3
(-2.4)
A 		22.8
(-3)
P 		99
avr 56
(-0.5) 		88.7
(3) 		78.4
(1.9) 		76.1
(1.6) 		60.7
(-0) 		33
(-3) 		56
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 9
(-1.6)
P 		10.4
(-0.3)
A 		14
(3)
A 		7.5
(-3)
M 		7
B 12
(3)
A 		2.6
(-3)
A 		5.8
(-1)
A 		6.6
(-0.4)
A 		9
C 11.4
(1.3)
A 		6.3
(-3)
A 		8.1
(-1.5)
A 		13.5
(3)
P 		7
avr 10.8
(3) 		6.4
(-3) 		9.3
(1) 		9.2
(0.8) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 15
(0.4)
P 		13.9
(-0.2)
M 		17.6
(1.7)
P 		13.5
(-0.4)
P 		20
(3)
P 		8.5
(-3)
A 		12
B 9.6
(-3)
A 		35
(3)
P 		22.6
(0.1)
P 		15
(-1.7)
P 		33.5
(2.6)
P 		15.4
(-1.6)
P 		25
C 21.8
(-0.1)
P 		37.1
(3)
P 		15.6
(-1.4)
P 		23.9
(0.3)
P 		10.8
(-2.3)
A 		7.6
(-3)
P 		30
avr 15.5
(-1.4) 		28.7
(3) 		18.6
(-0.3) 		17.5
(-0.7) 		21.4
(0.6) 		10.5
(-3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178304_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8800
Sequence Type Exemplar sequence
Representative Public ID K08D8.1 NCBI
Target Description K08D8.1 /REP_DB=WormBase Gene ID /WP=CE06140 /TR=Q21331 /GB=CAA97436.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070057(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070057 NCBI Caenorhabditis elegans K08D8.1 (K08D8.1) mRNA, complete cds. 11/11 None
K08D8.1 ENSEMBL cdna:known chromosome:CEL140:IV:12892009:12893253:1 gene:K08D8.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000040288 1/11 Cross Hyb Matching Probes None
GENEFINDER00000040296 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12892014-12893259(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K08D8.1
Entrez Gene 187142 Entrez gene
SwissProt Q21331 EMBL-EBI
WormBase CE06140 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA97436 Hypothetical protein K08D8.1 [Caenorhabditis elegans] ref|NP_502458.1| K08D8.1 [Caenorhabditis elegans] 2.0E-53
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502458.1 1 121-143
K08D8.1 1 121-143
Sequence
Target Sequence 
>C. ELEGANS:178304_AT
acggttgtaacaattcacaagcaacaaaaatcccattacaattaaaacaaaacttcaaaa
tgaaaagttcagaaaaaattcaaaatatcaaatttcagataaactctaagcaaatggagc
cacaaccccaaccaacctacgtgtacccatcatcttctcattttgatgctccacccgcat
atacagaagcatctggagcagtgtacacaccaaataatgtgcaaaatgggcaagtggttt
atgtggtggtgcctcagaatcagatggctttacaagcgggaaacgctagagcaagacgaa
tcttctgcacgattttctttataattctcttcatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGGTTGTAACAATTCACAAGCAAC 183 93 74 Antisense
CACAAGCAACAAAAATCCCATTACA 396 193 89 Antisense
TAAGCAAATGGAGCCACAACCCCAA 441 635 180 Antisense
GCTCCACCCGCATATACAGAAGCAT 371 297 241 Antisense
GCATCTGGAGCAGTGTACACACCAA 129 309 262 Antisense
GTGGTTTATGTGGTGGTGCCTCAGA 242 489 307 Antisense
GGTGCCTCAGAATCAGATGGCTTTA 1 503 321 Antisense
GATGGCTTTACAAGCGGGAAACGCT 384 407 336 Antisense
AAACGCTAGAGCAAGACGAATCTTC 231 125 354 Antisense
ACGAATCTTCTGCACGATTTTCTTT 88 93 369 Antisense
GATTTTCTTTATAATTCTCTTCATC 474 429 384 Antisense
Sequence Source Affymetrix Proprietary Database