[Home] | [Total List]

[178303_s_at]

Description F09C8.2 /REP_DB=WormBase Gene ID /WP=CE09281 /TR=O01299 /GB=CAA92220.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 47      4grp_high_8_8 > 04      6grp_total > 37      4grp_total > 12      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 226
1 2 3 4 range
A 243.4
(-1.3)
P 		196.5
(-3)
A 		231.3
(-1.8)
P 		365.8
(3)
P 		169
B 214.9
(-0.7)
P 		179.4
(-1.8)
P 		139.8
(-3)
A 		332.8
(3)
P 		193
C 202.9
(-0.2)
P 		183.6
(-1.1)
A 		145.6
(-3)
P 		268.3
(3)
P 		123
avr 220.4
(-1.1) 		186.5
(-2.4) 		172.2
(-3) 		322.3
(3) 		150

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 240
1 2 3 4 5 6 range
A 384.7
(3)
P 		249.1
(-0.8)
P 		173.1
(-3)
P 		177.7
(-2.9)
P 		203.8
(-2.1)
A 		292.9
(0.4)
P 		212
B 351.9
(3)
P 		247.6
(-0)
P 		253.4
(0.2)
P 		215.9
(-0.9)
M 		144.3
(-3)
P 		347.2
(2.9)
P 		208
C 352.4
(3)
P 		236
(-0.9)
P 		173.9
(-3)
A 		206.8
(-1.9)
A 		181.7
(-2.7)
P 		305.7
(1.4)
P 		179
avr 363
(3) 		244.2
(-0.8) 		200.1
(-2.2) 		200.1
(-2.2) 		176.6
(-3) 		315.3
(1.5) 		186
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 88.6
(3)
P 		42.7
(-3)
A 		60.5
(-0.7)
P 		53.5
(-1.6)
P 		46
B 68.5
(2.6)
P 		44.3
(-1.1)
P 		32.4
(-3)
A 		70.9
(3)
P 		39
C 67.2
(3)
P 		52.8
(-0.9)
A 		50.8
(-1.5)
P 		45.2
(-3)
P 		22
avr 74.8
(3) 		46.6
(-3) 		47.9
(-2.7) 		56.5
(-0.9) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 70.9
(0.9)
P 		88.6
(3)
P 		37.7
(-3)
P 		45.1
(-2.1)
P 		61.5
(-0.2)
A 		71.3
(1)
P 		51
B 122.4
(2.4)
P 		82.4
(-0.9)
P 		61.5
(-2.6)
P 		57.2
(-3)
M 		58.6
(-2.9)
P 		129.5
(3)
P 		72
C 130.6
(3)
P 		72
(-1)
P 		44.3
(-2.8)
A 		41.6
(-3)
A 		58.8
(-1.8)
P 		102.3
(1.1)
P 		89
avr 108
(3) 		81
(0.3) 		47.8
(-3) 		48
(-3) 		59.6
(-1.8) 		101
(2.3) 		60
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178303_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17651
Sequence Type Exemplar sequence
Representative Public ID F09C8.2 NCBI
Target Description F09C8.2 /REP_DB=WormBase Gene ID /WP=CE09281 /TR=O01299 /GB=CAA92220.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078234(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078234 NCBI Caenorhabditis elegans F09C8.2 (F09C8.2) mRNA, complete cds. 11/11 None
SNAP00000039974 ENSEMBL cdna:SNAP chromosome:CEL140:X:16141286:16143741:-1 11/11 None
GENEFINDER00000039978 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16141286:16146849:-1 11/11 None
F09C8.2.2 ENSEMBL cdna:known chromosome:CEL140:X:16140428:16146938:-1 gene:F09C8.2 11/11 None
F09C8.2.1 ENSEMBL cdna:known chromosome:CEL140:X:16140428:16146937:-1 gene:F09C8.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16141285-16146849(-) 98.89 100.0
Public Domain and Genome References
Gene Title
Ensembl F09C8.2
Entrez Gene 181690 Entrez gene
SwissProt O01299 EMBL-EBI
WormBase CE03178 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92220 Hypothetical protein F09C8.2 [Caenorhabditis elegans] ref|NP_510635.2| F09C8.2 [Caenorhabditis elegans] 0.0
blast CAE69992 Hypothetical protein CBG16396 [Caenorhabditis briggsae] 0.0
blast CAE69992 Hypothetical protein CBG16396 [Caenorhabditis briggsae] 1.0E-159
Sequence
Target Sequence 
>C. ELEGANS:178303_S_AT
aggcaaagtctagcgagcctctcacaatgagtgtcctagacgactgggaaactgccgacg
atgatgatttgacagttcgcatggaaaaccttctgaaggataagaaaaaagaagagaaaa
aagcgcaatcaatgtcaaaagctccaccaccgccgcaacgaaactcggattgggatacag
cgtttctccagcatgtgctggaaatctatggagtcccggactacaaaatgcaggaagacg
ttgtgaaggcaatggaaacaattggaaacggcgattgcaaggtgatgtggatggagcgaa
aagtggtgtttgccgtctttgaaagtgtgaaccgagccaaaaattgtctgactttgtcga
aacatgactggctgcgattccggagtctggcggattcgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGCAAAGTCTAGCGAGCCTCTCAC 659 53 1745 Antisense
GCGAGCCTCTCACAATGAGTGTCCT 54 291 1757 Antisense
AGACGACTGGGAAACTGCCGACGAT 45 71 1782 Antisense
GACAGTTCGCATGGAAAACCTTCTG 627 367 1815 Antisense
CAATCAATGTCAAAAGCTCCACCAC 435 181 1870 Antisense
CACCGCCGCAACGAAACTCGGATTG 612 199 1892 Antisense
TTGGGATACAGCGTTTCTCCAGCAT 85 709 1914 Antisense
GGAAATCTATGGAGTCCCGGACTAC 422 525 1944 Antisense
AAGTGGTGTTTGCCGTCTTTGAAAG 551 159 2045 Antisense
CGAAACATGACTGGCTGCGATTCCG 319 253 2102 Antisense
GATTCCGGAGTCTGGCGGATTCGCC 629 431 2120 Antisense
Sequence Source Affymetrix Proprietary Database