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[178301_at]

Description T05F1.4 /REP_DB=WormBase Gene ID /WP=CE13261 /TR=O18036 /GB=CAB04691.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 96      6grp_high1_10_10 > 79      4grp_highest_8_8 > 33      4grp_high_8_8 > 50      6grp_highest_nonorm > 92      6grp_total > 78      4grp_total > 61      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 154
1 2 3 4 range
A 263.3
(3)
P 		209.3
(-3)
P 		251.9
(1.7)
P 		240.1
(0.4)
P 		54
B 261.4
(1.9)
P 		278.4
(3)
P 		225.3
(-0.4)
P 		185.4
(-3)
P 		93
C 291.2
(3)
P 		247.5
(1.3)
P 		257.3
(1.7)
P 		137.7
(-3)
P 		154
avr 272
(3) 		245.1
(1.1) 		244.8
(1.1) 		187.7
(-3) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 323
1 2 3 4 5 6 range
A 337.7
(1.4)
P 		290.9
(-0.3)
P 		231.4
(-2.4)
P 		215.7
(-3)
P 		381.6
(3)
P 		369.5
(2.6)
P 		166
B 267.7
(-2.4)
P 		299.3
(-1.4)
P 		289.4
(-1.7)
P 		249.2
(-3)
P 		350.6
(0.2)
P 		437
(3)
P 		188
C 255.7
(-2.5)
P 		250.8
(-2.5)
P 		227.4
(-3)
P 		279.3
(-2)
P 		317.8
(-1.3)
P 		538.6
(3)
P 		311
avr 287
(-1.8) 		280.3
(-2) 		249.4
(-3) 		248.1
(-3) 		350
(0.1) 		448.4
(3) 		200
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 95.9
(3)
P 		45.4
(-2)
P 		65.8
(0)
P 		35.1
(-3)
P 		61
B 83.4
(3)
P 		68.8
(1)
P 		52.2
(-1.3)
P 		39.5
(-3)
P 		44
C 96.4
(3)
P 		71.2
(0.9)
P 		89.7
(2.5)
P 		23.2
(-3)
P 		73
avr 91.9
(3) 		61.8
(-0) 		69.2
(0.7) 		32.6
(-3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 130
1 2 3 4 5 6 range
A 62.2
(-1.9)
P 		103.5
(1.9)
P 		50.4
(-3)
P 		54.7
(-2.6)
P 		115.2
(3)
P 		90
(0.7)
P 		65
B 93.1
(-1.3)
P 		99.6
(-0.9)
P 		70.3
(-2.7)
P 		66
(-3)
P 		142.5
(1.7)
P 		163
(3)
P 		97
C 94.8
(-1.1)
P 		76.5
(-2)
P 		57.9
(-2.9)
P 		56.2
(-3)
P 		102.8
(-0.7)
P 		180.3
(3)
P 		124
avr 83.4
(-1.3) 		93.2
(-0.6) 		59.5
(-3) 		59
(-3) 		120.2
(1.3) 		144.4
(3) 		85
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178301_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1788
Sequence Type Exemplar sequence
Representative Public ID T05F1.4 NCBI
Target Description T05F1.4 /REP_DB=WormBase Gene ID /WP=CE13261 /TR=O18036 /GB=CAB04691.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060157(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060157 NCBI Caenorhabditis elegans T05F1.4 (T05F1.4) mRNA, complete cds. 11/11 None
SNAP00000020943 ENSEMBL cdna:SNAP chromosome:CEL140:I:9639518:9640317:1 11/11 None
GENEFINDER00000020952 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9639518:9640493:1 11/11 None
T05F1.4 ENSEMBL cdna:known chromosome:CEL140:I:9639513:9640524:1 gene:T05F1.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9639448-9640248(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T05F1.4
Entrez Gene 172807 Entrez gene
SwissProt O18036 EMBL-EBI
WormBase CE13261 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04691 Hypothetical protein T05F1.4 [Caenorhabditis elegans] ref|NP_492558.1| T05F1.4 [Caenorhabditis elegans] 6.0E-97
blast CAB04691 Hypothetical protein T05F1.4 [Caenorhabditis elegans] ref|NP_492558.1| T05F1.4 [Caenorhabditis elegans] 5.0E-92
blast CAB04691 Hypothetical protein T05F1.4 [Caenorhabditis elegans] ref|NP_492558.1| T05F1.4 [Caenorhabditis elegans] 1.0E-85
Sequence
Target Sequence 
>C. ELEGANS:178301_AT
ggcatcattccacgcggaggtggttattcaaaaagacgcggaagaggaagacgaggtggt
ggaaatggtggattccgtgatgatattagagataatcaatcagatcgacacttgagtcca
gacagaagatcaaatcacagcgaggatcgtcatgaacatcgtttcaacaactatcgccaa
caaaatcggccgaatagtcgtactccaagtccatccaatcataatcaagttcaaacatac
cgtaataatccgtttgatgcacgtcctgctttatcatcgaatgatcgagaccaaggccgt
aaccggttttcccctccatctttcagacgagatggaagggatagtgatcggaatggatac
catgagaaagaagaagagccaacaagaggaagccgtaatgatttacgaactattttgaaa
ccaacagacaaagaagcagctagaacgtggaaattaagaatcgctgacgccgaagaagct
atccgacgggccgagtttcagttacgcagggcaaaaatggaccacgaggctcttctagaa
gca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCATCATTCCACGCGGAGGTGGTT 131 537 25 Antisense
GAACATCGTTTCAACAACTATCGCC 556 351 178 Antisense
GGCCGAATAGTCGTACTCCAAGTCC 353 541 212 Antisense
TCCAAGTCCATCCAATCATAATCAA 638 587 228 Antisense
ATAATCCGTTTGATGCACGTCCTGC 269 25 269 Antisense
CACGTCCTGCTTTATCATCGAATGA 617 199 284 Antisense
TGATCGAGACCAAGGCCGTAACCGG 390 563 306 Antisense
TCCCCTCCATCTTTCAGACGAGATG 328 597 334 Antisense
CTGACGCCGAAGAAGCTATCCGACG 178 237 488 Antisense
CTATCCGACGGGCCGAGTTTCAGTT 610 223 503 Antisense
GGACCACGAGGCTCTTCTAGAAGCA 641 521 543 Antisense
Sequence Source Affymetrix Proprietary Database