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[178300_at]

Description F13E9.6 /REP_DB=WormBase Gene ID /WP=CE05608 /TR=Q19411 /GB=CAA93409.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 37      4grp_total > 27      6grp_cgc > 16      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 37.5
(0.6)
A 		50.4
(3)
A 		18.8
(-3)
A 		32.9
(-0.3)
A 		32
B 22.8
(-1.2)
A 		10.3
(-3)
A 		28.8
(-0.3)
A 		51.5
(3)
A 		41
C 18.9
(-1.8)
A 		72.4
(2.8)
A 		4.2
(-3)
A 		75
(3)
A 		71
avr 26.4
(-1.5) 		44.4
(1.5) 		17.3
(-3) 		53.1
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 42
(2.2)
A 		20.5
(-0.6)
A 		12.6
(-1.6)
A 		2.2
(-3)
A 		22.7
(-0.3)
A 		47.8
(3)
A 		46
B 26.2
(0.5)
A 		7.1
(-3)
A 		40
(3)
A 		22.8
(-0.1)
A 		7.1
(-3)
A 		24.6
(0.2)
A 		33
C 25.6
(-0.4)
A 		50.2
(3)
A 		7
(-3)
A 		16.8
(-1.6)
A 		22.4
(-0.9)
A 		10.7
(-2.5)
A 		43
avr 31.3
(3) 		25.9
(1.1) 		19.9
(-0.9) 		13.9
(-3) 		17.4
(-1.8) 		27.7
(1.8) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 13.6
(3)
A 		10.9
(1.2)
A 		4.9
(-2.9)
A 		4.8
(-3)
A 		9
B 7.3
(0.4)
A 		2.5
(-3)
A 		6.7
(-0)
A 		11
(3)
A 		9
C 6.3
(-1.5)
A 		20.8
(3)
A 		1.5
(-3)
A 		12.6
(0.5)
A 		19
avr 9.1
(1) 		11.4
(3) 		4.4
(-3) 		9.5
(1.4) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 7.7
(0.9)
A 		7.3
(0.7)
A 		2.7
(-1.9)
A 		0.6
(-3)
A 		6.8
(0.4)
A 		11.6
(3)
A 		11
B 9.1
(2.5)
A 		2.4
(-3)
A 		9.7
(3)
A 		6
(-0)
A 		2.9
(-2.6)
A 		9.2
(2.6)
A 		7
C 9.5
(0.4)
A 		15.3
(3)
A 		1.8
(-3)
A 		3.4
(-2.3)
A 		7.2
(-0.6)
A 		3.6
(-2.2)
A 		14
avr 8.8
(3) 		8.3
(2.5) 		4.7
(-1.5) 		3.3
(-3) 		5.6
(-0.5) 		8.1
(2.2) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178300_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8813
Sequence Type Exemplar sequence
Representative Public ID F13E9.6 NCBI
Target Description F13E9.6 /REP_DB=WormBase Gene ID /WP=CE05608 /TR=Q19411 /GB=CAA93409.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069617(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069617 NCBI Caenorhabditis elegans F13E9.6 (F13E9.6) mRNA, complete cds. 11/11 None
SNAP00000017040 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10877807:10878849:-1 11/11 None
GENEFINDER00000017058 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10877807:10880416:-1 11/11 None
F13E9.6 ENSEMBL cdna:known chromosome:CEL140:IV:10877807:10878849:-1 gene:F13E9.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10877812-10878855(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sdz-13
Ensembl F13E9.6
Entrez Gene 184424 Entrez gene
SwissProt Q19411 EMBL-EBI
WormBase CE05608 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93409 Hypothetical protein F13E9.6 [Caenorhabditis elegans] ref|NP_502018.1| F13E9.6 [Caenorhabditis elegans] 1.0E-146
blast CAA93409 Hypothetical protein F13E9.6 [Caenorhabditis elegans] ref|NP_502018.1| F13E9.6 [Caenorhabditis elegans] 1.0E-145
blast CAE70830 Hypothetical protein CBG17610 [Caenorhabditis briggsae] 1.0E-70
blast CAE70830 Hypothetical protein CBG17610 [Caenorhabditis briggsae] 2.0E-70
Sequence
Target Sequence 
>C. ELEGANS:178300_AT
gaagtccgaaccctggagattctccagaagctcaacaagtctggaaaacaagaatggatt
ctttatgtcatcaaatattcagattatacttcgtatgactgcttttccctgtcagacagc
ttcattacccagatgtttgattccgagacatctaacttgaaatgtactcttgtgtttgtc
gaagatgtgctgaattttaaaatggctagtttgtctgataaatggagactcattgagttc
atccgagccaatatcgctagtaacgcttatgtgtgttcgggatttttggaaaactctcca
ttattaacttcaaatcaaaaagttaacattttattccatcatacatcactcgtcatcatt
aacaagtcttctcaacaaattatcacacataaatccctatttgacatggaacttattgtc
ttcaaagaggaaaaaacttcatttgtctgtaagacttccaaggaatctgaattctggtcg
attcgagctgtcaacatggagaagctggcggacttaatctacgaggcaatcgagattcgg
ggactttctgtcgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGTCCGAACCCTGGAGATTCTCC 443 335 172 Antisense
TATACTTCGTATGACTGCTTTTCCC 58 661 256 Antisense
TGTCAGACAGCTTCATTACCCAGAT 317 559 281 Antisense
TTACCCAGATGTTTGATTCCGAGAC 215 683 296 Antisense
GAAATGTACTCTTGTGTTTGTCGAA 585 361 330 Antisense
GACTCATTGAGTTCATCCGAGCCAA 578 373 398 Antisense
ACGCTTATGTGTGTTCGGGATTTTT 5 85 434 Antisense
TCCATCATACATCACTCGTCATCAT 238 591 506 Antisense
GGTCGATTCGAGCTGTCAACATGGA 276 503 647 Antisense
GCTGGCGGACTTAATCTACGAGGCA 674 293 675 Antisense
CGAGATTCGGGGACTTTCTGTCGCT 153 249 702 Antisense
Sequence Source Affymetrix Proprietary Database