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[178298_at]

Description F13A7.7 /REP_DB=WormBase Gene ID /WP=CE19789 /TR=Q9XTW0 /GB=CAB07580.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 23      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 29.9
(1.6)
A 		37.6
(3)
A 		5
(-3)
A 		32.7
(2.1)
A 		33
B 17.2
(0.4)
A 		4.4
(-2.6)
A 		28.3
(3)
A 		2.5
(-3)
A 		26
C 30
(2.1)
A 		1.7
(-3)
A 		5.1
(-2.4)
A 		35.3
(3)
A 		34
avr 25.7
(3) 		14.6
(-2.2) 		12.8
(-3) 		23.5
(2) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 1.7
(-2.9)
A 		1.1
(-3)
A 		22.5
(0.1)
A 		26.8
(0.7)
A 		32.5
(1.5)
A 		42.8
(3)
A 		42
B 3
(-2.8)
A 		16.9
(-1.2)
A 		1.3
(-3)
A 		13.8
(-1.5)
A 		37
(1.2)
A 		52.9
(3)
P 		52
C 4.2
(-3)
A 		27.1
(-0.2)
A 		21.2
(-0.9)
A 		9.9
(-2.3)
A 		37.4
(1)
A 		53.8
(3)
P 		50
avr 3
(-3) 		15
(-1.5) 		15
(-1.5) 		16.8
(-1.2) 		35.6
(1.2) 		49.8
(3) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 10.9
(3)
A 		8.2
(1.3)
A 		1.3
(-3)
A 		4.8
(-0.8)
A 		10
B 5.5
(1.9)
A 		1.1
(-2.4)
A 		6.6
(3)
A 		0.5
(-3)
A 		6
C 9.9
(3)
A 		0.5
(-3)
A 		1.8
(-2.2)
A 		5.9
(0.4)
A 		9
avr 8.8
(3) 		3.3
(-2.9) 		3.2
(-3) 		3.7
(-2.5) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 0.3
(-3)
A 		0.4
(-2.9)
A 		4.9
(-0.3)
A 		6.8
(0.9)
A 		9.8
(2.6)
A 		10.4
(3)
A 		10
B 1.1
(-2.8)
A 		5.6
(-1.4)
A 		0.3
(-3)
A 		3.7
(-1.9)
A 		15
(1.5)
A 		19.7
(3)
P 		19
C 1.5
(-3)
A 		8.3
(-0.5)
A 		5.4
(-1.6)
A 		2
(-2.8)
A 		12.1
(0.9)
A 		18
(3)
P 		17
avr 1
(-3) 		4.8
(-1.5) 		3.5
(-2) 		4.2
(-1.7) 		12.3
(1.5) 		16
(3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178298_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14015
Sequence Type Exemplar sequence
Representative Public ID F13A7.7 NCBI
Target Description F13A7.7 /REP_DB=WormBase Gene ID /WP=CE19789 /TR=Q9XTW0 /GB=CAB07580.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074737(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074737 NCBI Caenorhabditis elegans F13A7.7 (F13A7.7) mRNA, complete cds. 11/11 None
SNAP00000025223 ENSEMBL cdna:SNAP chromosome:CEL140:V:16384750:16385423:-1 10/11 None
GENEFINDER00000025232 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16384750:16387877:-1 11/11 None
F13A7.7 ENSEMBL cdna:known chromosome:CEL140:V:16384750:16386358:-1 gene:F13A7.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16384749-16386358(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F13A7.7
Entrez Gene 184403 Entrez gene
SwissProt Q9XTW0 EMBL-EBI
WormBase CE19789 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07580 Hypothetical protein F13A7.7 [Caenorhabditis elegans] ref|NP_507138.1| F13A7.7 [Caenorhabditis elegans] 0.0
blast CAB07580 Hypothetical protein F13A7.7 [Caenorhabditis elegans] ref|NP_507138.1| F13A7.7 [Caenorhabditis elegans] 1.0E-147
blast CAB07580 Hypothetical protein F13A7.7 [Caenorhabditis elegans] ref|NP_507138.1| F13A7.7 [Caenorhabditis elegans] 1.0E-107
blast T20811 hypothetical protein F13A7.6 - Caenorhabditis elegans 3.0E-74
blast CAE69243 Hypothetical protein CBG15287 [Caenorhabditis briggsae] 6.0E-55
blast AAB09101 Hypothetical protein F22H10.4 [Caenorhabditis elegans] ref|NP_510695.1| F22H10.4 [Caenorhabditis elegans] 1.0E-52
blast CAE69243 Hypothetical protein CBG15287 [Caenorhabditis briggsae] 5.0E-40
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.0E-20
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000025232 3 60-82,106-128,140-162
Sequence
Target Sequence 
>C. ELEGANS:178298_AT
caacatgtttggccacctattcaggcgtgacattccttgcctcattgacaaggaatacga
actacagtcggacaacttctcgtgcggttaccgagtcattggagctctcgtggatattgc
tcgcgacaagaaccccgggaagtttaaatacagcagaaatgcgattctggattttttgaa
gctcgttttaaatacttcaaagccgacatgggagatgttcgagcaggcaaaacttggaag
acacaagtcttatagtggaagtcagtgtgtgaagctttacattccaaacctgtcatattc
caactccacgagctccagtcgggcttcttctgtggattctttggcatctttcaattcaca
aagttcaacagattcgcagaatactttccgtaaaaacggtggtagggaccaattagaatg
gaaacaaggacctgttagaatggcaaagcttcctgtttttccagaacctgaaaactcggt
aaaacgggacatgacttctccaaaacctaatgatgatgatggcacacttatgggatactt
tagacatggatatcaaagtgtcgcggattttttccataga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACATGTTTGGCCACCTATTCAGG 158 189 462 Antisense
ATTCAGGCGTGACATTCCTTGCCTC 667 9 480 Antisense
ACTACAGTCGGACAACTTCTCGTGC 21 101 522 Antisense
GTGCGGTTACCGAGTCATTGGAGCT 574 475 543 Antisense
GGATATTGCTCGCGACAAGAACCCC 194 509 573 Antisense
GAAGCTTTACATTCCAAACCTGTCA 183 341 732 Antisense
TCCAAACCTGTCATATTCCAACTCC 321 587 744 Antisense
CTGTGGATTCTTTGGCATCTTTCAA 668 239 791 Antisense
GAATGGCAAAGCTTCCTGTTTTTCC 201 333 899 Antisense
ACGGGACATGACTTCTCCAAAACCT 521 95 945 Antisense
AAGTGTCGCGGATTTTTTCCATAGA 473 159 1017 Antisense
Sequence Source Affymetrix Proprietary Database