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[178297_at]

Description T24B8.5 /REP_DB=WormBase Gene ID /WP=CE03713 /TR=Q22714 /GB=CAA92755.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 18      4grp_total > 56      6grp_total_sub > Decrease      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1998
1 2 3 4 range
A 303.7
(-2.1)
P 		1363.7
(1)
P 		2015.8
(3)
P 		17.5
(-3)
A 		1998
B 277.2
(-2.1)
P 		1080.1
(0.9)
P 		1661.5
(3)
P 		22.9
(-3)
A 		1639
C 320.9
(-2.1)
P 		1059.9
(0.6)
P 		1739.4
(3)
P 		56.1
(-3)
A 		1683
avr 300.6
(-2.1) 		1167.9
(0.8) 		1805.6
(3) 		32.2
(-3) 		1773

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 178
1 2 3 4 5 6 range
A 177.8
(3)
P 		39.4
(-1.9)
A 		7.1
(-3)
A 		39.1
(-1.9)
A 		36.7
(-2)
A 		48.8
(-1.5)
A 		171
B 183.5
(3)
P 		53.5
(-1.4)
P 		17.1
(-2.6)
A 		5.7
(-3)
A 		43.7
(-1.7)
A 		55.2
(-1.3)
P 		178
C 173.3
(3)
P 		79.4
(-0.4)
P 		5.8
(-3)
A 		45.2
(-1.6)
A 		52
(-1.3)
M 		39.2
(-1.8)
A 		168
avr 178.2
(3) 		57.4
(-1.3) 		10
(-3) 		30
(-2.3) 		44.1
(-1.8) 		47.7
(-1.7) 		168
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 604
1 2 3 4 range
A 110.6
(-1.8)
P 		296
(0.4)
P 		527
(3)
P 		2.6
(-3)
A 		524
B 88.4
(-1.7)
P 		266.8
(1.1)
P 		385
(3)
P 		4.9
(-3)
A 		380
C 106.2
(-2)
P 		304.7
(-0)
P 		606.2
(3)
P 		9.5
(-3)
A 		597
avr 101.7
(-1.8) 		289.2
(0.4) 		506.1
(3) 		5.7
(-3) 		500

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 32.8
(3)
P 		14
(-0.6)
A 		1.5
(-3)
A 		9.9
(-1.4)
A 		11.1
(-1.2)
A 		11.9
(-1)
A 		31
B 63.9
(3)
P 		17.8
(-1.4)
P 		4.1
(-2.8)
A 		1.5
(-3)
A 		17.8
(-1.4)
A 		20.6
(-1.2)
P 		62
C 64.2
(3)
P 		24.2
(-0.8)
P 		1.5
(-3)
A 		9.1
(-2.3)
A 		16.8
(-1.5)
M 		13.1
(-1.9)
A 		63
avr 53.6
(3) 		18.7
(-1.1) 		2.4
(-3) 		6.8
(-2.5) 		15.2
(-1.5) 		15.2
(-1.5) 		51
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178297_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3981
Sequence Type Exemplar sequence
Representative Public ID T24B8.5 NCBI
Target Description T24B8.5 /REP_DB=WormBase Gene ID /WP=CE03713 /TR=Q22714 /GB=CAA92755.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063536(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063536 NCBI Caenorhabditis elegans T24B8.5 (T24B8.5) mRNA, complete cds. 11/11 None
SNAP00000039892 ENSEMBL cdna:SNAP chromosome:CEL140:II:9082644:9083041:-1 11/11 None
T24B8.5 ENSEMBL cdna:known chromosome:CEL140:II:9082751:9083041:-1 gene:T24B8.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9082747-9083038(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T24B8.5
Entrez Gene 188838 Entrez gene
SwissProt Q22714 EMBL-EBI
WormBase CE03713 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92755 Hypothetical protein T24B8.5 [Caenorhabditis elegans] ref|NP_495937.1| T24B8.5 [Caenorhabditis elegans] 1.0E-42
blast CAE59797 Hypothetical protein CBG03259 [Caenorhabditis briggsae] 6.0E-39
blast CAE59797 Hypothetical protein CBG03259 [Caenorhabditis briggsae] 4.0E-31
blast CAE56272 Hypothetical protein CBG23917 [Caenorhabditis briggsae] 9.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.6E-10
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 0.12
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 6.9E-10
Sequence
Target Sequence 
>C. ELEGANS:178297_AT
atgcgttatctcatcggatttgtgattgtgcttgtagcttacactgcttcagagtcgtgt
gtcgactcaagaccatcatgcccttcactcaaaaattactgtaacgaagcagatgttaga
agtggttgtcgtaaaacctgtggtgtctgcgttaccgatactccatttgtatgcgaagac
aagctcggtctctgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCGTTATCTCATCGGATTTGTGA 76 43 13 Antisense
GGATTTGTGATTGTGCTTGTAGCTT 98 511 28 Antisense
TGTGCTTGTAGCTTACACTGCTTCA 58 557 39 Antisense
CACTGCTTCAGAGTCGTGTGTCGAC 281 199 54 Antisense
GTGTGTCGACTCAAGACCATCATGC 535 487 69 Antisense
CATCATGCCCTTCACTCAAAAATTA 197 213 86 Antisense
GCAGATGTTAGAAGTGGTTGTCGTA 637 311 121 Antisense
GTTGTCGTAAAACCTGTGGTGTCTG 18 437 137 Antisense
TGTGGTGTCTGCGTTACCGATACTC 364 555 151 Antisense
GTTACCGATACTCCATTTGTATGCG 373 445 163 Antisense
TGCGAAGACAAGCTCGGTCTCTGCC 59 585 184 Antisense
Sequence Source Affymetrix Proprietary Database